WormBase Tree Display for Gene: WBGene00235280

WBGene00235280 SMap: S_parent: Sequence: F42A9
  Identity: Version: 1
    Name: Sequence_name: F42A9.17
      Molecular_name: F42A9.17
        F42A9.17.1
        CE48949
      Other_name: CELE_F42A9.17 Accession_evidence: NDB BX284604
      Public_name: F42A9.17
    DB_info: Database: NDB locus_tag CELE_F42A9.17
        NCBI gene 24104572
        RefSeq protein NM_001307514.4
        TrEMBL UniProtAcc U4PMB0
        UniProt_GCRP UniProtAcc U4PMB0
    Species: Caenorhabditis elegans
    History: Version_change: 1 04 Sep 2013 12:09:39 WBPerson4025 Event: Created
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (11)
    RNASeq_FPKM (74)
    Ortholog: Sp34_40071200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11114 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in intestine based on microarray studies. Is affected by several genes including numr-2; numr-1; and atfs-1 based on RNA-seq and microarray studies. Is affected by six chemicals including Ag nanoparticles; Doxycycline; and Tamoxifen based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
            WBPaper00067038
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS296 version of WormBase
          Date_last_updated: 20 Mar 2025 00:00:00
  Molecular_info: Corresponding_CDS: F42A9.17
    Corresponding_transcript: F42A9.17.1
  Experimental_info: RNAi_result: WBRNAi00014811 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr2003628
      Expr2021847
    Microarray_results: SMD_F42A9.6
      GPL19516_CGZ0021207
      GPL21109_F42A9.17
    Expression_cluster: WBPaper00045521:Spermatogenic
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00057068:numr-1(RNAi)_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059426:Ag-nanoparticles_upregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
      WBPaper00066587:S.epidermidis_upregulated_mab-5(e1239)
      WBPaper00066890:eat-2(ad465)_downregulated
      WBPaper00067137:mccc-1(ww4)_downregulated
      WBPaper00067479:Microbiota-Pathogen_vs_Microbiota_upregulated
      cgc4489_group_2
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      [cgc6390]:intrinsic
  Map_info: Positive: Positive_clone: F42A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 3.90865
  Method: Gene