WormBase Tree Display for Gene: WBGene00206519

WBGene00206519 SMap: S_parent: Sequence: F36H5
  Identity: Version: 1
    Name: Sequence_name: F36H5.13
      Molecular_name: F36H5.13
        F36H5.13.1
        CE46465
        F36H5.13.2
      Other_name: CELE_F36H5.13 Accession_evidence: NDB BX284602
      Public_name: F36H5.13
    DB_info: Database: WormFlux gene WBGene00206519
        NDB locus_tag CELE_F36H5.13
        Panther gene CAEEL|WormBase=WBGene00206519|UniProtKB=G4RXN1
          family PTHR22899
        NCBI gene 13183734
        RefSeq protein NM_001267107.5
        TrEMBL UniProtAcc G4RXN1
        UniProt_GCRP UniProtAcc G4RXN1
    Species: Caenorhabditis elegans
    History: Version_change: 1 20 Jul 2011 09:28:26 WBPerson1867 Event: Split_from: WBGene00018106
      Split_from: WBGene00018106
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (103)
    RNASeq_FPKM (74)
    Ortholog: WBGene00041425 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00156319 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00161819 Caenorhabditis brenneri From_analysis: Inparanoid_8
      chrII_pilon.g3461 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (143)
    Structured_description: Automated_description: Enriched in several structures, including ABalaaaarl; ABalaaaarr; ABalpapaap; amphid neurons; and rectal epithelial cell based on single-cell RNA-seq and microarray studies. Is affected by several genes including swsn-1; mut-2; and etr-1 based on RNA-seq and microarray studies. Is affected by eleven chemicals including mianserin; multi-walled carbon nanotube; and bisphenol A based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box associated; F-box associated domain, type 2; and F-box domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: F36H5.13
    Corresponding_transcript: F36H5.13.1
      F36H5.13.2
  Experimental_info: RNAi_result: WBRNAi00031887 Inferred_automatically: RNAi_primary
      WBRNAi00046547 Inferred_automatically: RNAi_primary
      WBRNAi00014461 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1040514
      Expr1150431
      Expr2003411
      Expr2021626
    Microarray_results (14)
    Expression_cluster: WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048926:miaserin_upregulated_adult-day5
      WBPaper00049377:MWCNT_upregulated
      WBPaper00049954:BPA_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Metformin_upregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00059117:B.subtilis_downregulated
      WBPaper00059224:tph-1(mg280)_upregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00060921:tdc-1(n3419)_downregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061340:ABarpaaa_lineage
      WBPaper00061340:AMso_parent
      WBPaper00061340:B
      WBPaper00061340:Body_wall_muscle
      WBPaper00061340:Ciliated_amphid_neuron
      WBPaper00061340:F_U
      WBPaper00061340:I2_grandparent
      WBPaper00061340:K_Kprime
      WBPaper00061340:Neuroblast_AFD_RMD
      WBPaper00061340:Neuroblast_ASH_RIB
      WBPaper00061340:Neuroblast_AWC_SAAVx
      WBPaper00061340:Neuroblast_BAG_SMDVx
      WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
      WBPaper00061340:Parents_of_U_F_B_DVA
      WBPaper00061340:Parents_of_Y_DA6_DA7_DA9
      WBPaper00061340:Parent_of_AMsh_URB
      WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
      WBPaper00061340:Parent_of_hyp1V_and_ant_arc_V
      WBPaper00061340:Parent_of_hyp3_ILsoDx
      WBPaper00061340:Parent_of_K_Kprime
      WBPaper00061340:Parent_of_PVP_and_rect_V
      WBPaper00061340:Parent_of_tail_spike_and_hyp10
      WBPaper00061340:RME_LR_parent
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_downregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:fbxb-13-fbxb-24
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00064999:miR-229-64-65-66_upregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day1_25C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_downregulated_WT
      cgc4489_group_18
      WBPaper00025032:cluster_17
      WBPaper00027111:rde-3(ne298)_upregulated
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030985:Serratia_marcesens_upregulated
      WBPaper00036286:Pattern_D
      WBPaper00036464:S.aureus-RN6390_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00041002:HF_11d_0.2mM_Up
      WBPaper00041960:daf-16_fasting_upregulated
      WBPaper00041960:kgb-1_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00046639:tyrosol_upregulated
      WBPaper00048567:dnj-14_downregulated
      WBPaper00050767:Octopamine_induced
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:cluster_4
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(53_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SE_pi(53_min)
      [cgc5976]:class_2
  Map_info: Positive: Positive_clone: F36H5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -14.5017
  Method: Gene