WormBase Tree Display for Gene: WBGene00017441

WBGene00017441 SMap: S_parent: Sequence: F13H8
  Identity: Version: 1
    Name: Sequence_name: F13H8.8
      Molecular_name: F13H8.8
        F13H8.8.1
        CE35477
        F13H8.8.2
      Other_name: CELE_F13H8.8 Accession_evidence: NDB BX284602
      Public_name: F13H8.8
    DB_info: Database: AceView gene 2G556
        WormQTL gene WBGene00017441
        WormFlux gene WBGene00017441
        NDB locus_tag CELE_F13H8.8
        Panther gene CAEEL|WormBase=WBGene00017441|UniProtKB=Q19432
          family PTHR21720
        NCBI gene 184439
        RefSeq protein NM_062854.3
        TREEFAM TREEFAM_ID TF316274
        TrEMBL UniProtAcc Q19432
        UniProt_GCRP UniProtAcc Q19432
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (41)
    RNASeq_FPKM (74)
    Ortholog (22)
    Paralog: WBGene00009182 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00010920 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00194892 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021471 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00219275 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including ABalaaaarl; ABalaaaarr; ABalppappa; AFD; and germ line based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including cyc-1; swsn-9; and mut-16 based on microarray; RNA-seq; and tiling array studies. Is affected by thirteen chemicals including manganese chloride; rifampin; and Sirolimus based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
            WBPaper00067038
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS296 version of WormBase
          Date_last_updated: 20 Mar 2025 00:00:00
  Molecular_info: Corresponding_CDS: F13H8.8
    Corresponding_CDS_history: F13H8.8:wp107
    Corresponding_transcript: F13H8.8.1
      F13H8.8.2
    Associated_feature: WBsf988117
      WBsf988118
      WBsf1012355
      WBsf1012356
      WBsf223143
  Experimental_info: RNAi_result: WBRNAi00013254 Inferred_automatically: RNAi_primary
      WBRNAi00030917 Inferred_automatically: RNAi_primary
      WBRNAi00044564 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017644
      Expr1037504
      Expr1148521
      Expr2002549
      Expr2020766
    Drives_construct: WBCnstr00027297
    Construct_product: WBCnstr00027297
    Microarray_results (22)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037682:sma-2_downregulated
      WBPaper00042194:nhr-114(RNAi)_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:rising_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045050:csr-1(hypomorph)_upregulated
      WBPaper00045521:Spermatogenic
      WBPaper00045729:gld-2(RNAi)_upregulated
      WBPaper00045861:wdr-5(ok1417)_upregulated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00047131:daf-2(e1370)_downregulated_hel-1(gk148684)-background
      WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
      WBPaper00048611:MnCl2_downregulated
      WBPaper00049177:rpn-10(ok1865)_upregulated
      WBPaper00049498:npr-1(ur89)_regulated_1
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049736:15deg-then-25deg(12hr)_upregulated_N2
      WBPaper00050094:mes-2(bn11)_upregulated
      WBPaper00050094:mes-6(bn66)_upregulated
      WBPaper00050231:male_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050743:elli-1(sam-3)_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00051404:alg-2(ok304)_downregulated
      WBPaper00051558:fog-2(q71)_regulated
      WBPaper00052885:hrde-1(tm1200)-emb-4(qm31)_regulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053814:25C_upregulated_PY79
      WBPaper00054758:alg-1(gk204)_downregulated
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056039:ptl-1(ok621)_upregulated
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056446:hsb-1(cg116)_downregulated
      WBPaper00056855:his-72(uge40)_upregulated
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00057265:metaformin_downregulated_OP50
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00058942:henn-1(pk2295)_upregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059605:mut-16(pk710)_upregulated
      WBPaper00059605:simr-1(cmp36)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060526:plp-1(ok2155)_upregulated
      WBPaper00060764:swsn-9(ok1354)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060886:spr-5(by101)_upregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:Neuroblast_BAG_SMDVx
      WBPaper00061340:Parent_of_g1P_I3
      WBPaper00061340:RME_LR_parent
      WBPaper00061340:URA_parent
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061478:pie-1(ne4433)_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061479:prg-1(tm872)_upregulated
      WBPaper00061527:C01G10.14-dct-9_3227
      WBPaper00061572:oleic-acid-specific_mating_upregulated
      WBPaper00061823:mex-3(spr10)_upregulated
      WBPaper00061995:mter-4(syb3662syb3403)_upregulated
      WBPaper00062056:lin-36(we36)_upregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065158:AFD_enriched
      WBPaper00065288:mdt-15(tm2182)_upregulated
      WBPaper00065749:endu-2(tm4977)_downregulated
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066085:sin-3(syb2172)_downregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066448:hrde-2(qe20)_upregulated
      WBPaper00066547:bcat-1(overexpress)_downregulated_transcript
      WBPaper00066587:S.epidermidis_upregulated_mab-5(e1239)
      WBPaper00066594:ilc-17.1(syb5296)_upregulated
      WBPaper00066618:fmi-1(rh308)_upregulated
      WBPaper00066858:osm-3(p802)_downregulated_OP50
      WBPaper00066919:csr-1(RNAi)_upregulated
      WBPaper00066970:lin-29(n333)_upregulated
      WBPaper00067044:hda-1(RNAi)_upregulated
      WBPaper00067147:germline_expressed
      WBPaper00067255:skn-1(lax188)_upregulated_PA
      WBPaper00067267:daf-2(e1370)_downregulated_nuclei
      WBPaper00067474:HSF-1(OverExpress)_upregulated
      WBPaper00067474:ubql-1(tm1574)_upregulated
      WBPaper00067474:ubql-1(tm1574)_upregulated_HSF-1(OE)
      cgc4489_group_23
      WBPaper00005124:progesterone_10-7M_regulated
      WBPaper00036286:Pattern_H
      WBPaper00037695:WC_5-day
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00038172:tax-6null_down_regulated
      WBPaper00041174:environmental
      WBPaper00041174:genotype_environment_interaction
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_24h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00050650:mBmkTX_downregulated
      [cgc6390]:spermatogenesis-enriched
    Interaction: WBInteraction000245791
      WBInteraction000427602
  Map_info: Positive: Positive_clone: F13H8 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -0.391897
  Method: Gene