WormBase Tree Display for Gene: WBGene00010101

WBGene00010101 SMap: S_parent: Sequence: F55C9
  Identity: Version: 2
    Name: CGC_name: fbxb-57 Person_evidence: WBPerson655
      Sequence_name: F55C9.4
      Molecular_name: F55C9.4
        F55C9.4.1
        CE18736
      Other_name: CELE_F55C9.4 Accession_evidence: NDB BX284605
      Public_name: fbxb-57
    DB_info: Database: AceView gene 5T763
        WormQTL gene WBGene00010101
        WormFlux gene WBGene00010101
        NDB locus_tag CELE_F55C9.4
        Panther gene CAEEL|WormBase=WBGene00010101|UniProtKB=Q9XUZ4
          family PTHR22899
        NCBI gene 186292
        RefSeq protein NM_075352.3
        TrEMBL UniProtAcc Q9XUZ4
        UniProt_GCRP UniProtAcc Q9XUZ4
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Dec 2005 17:22:20 WBPerson2970 Name_change: CGC_name: fbxb-57
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxb
    Allele (46)
    RNASeq_FPKM (74)
    Ortholog: chrV_pilon.g17855 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (143)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in ABplpapapa; ABprpapapa; G2; and W cell based on single-cell RNA-seq studies. Is affected by several genes including rsr-2; ash-2; and hsf-1 based on tiling array; RNA-seq; and microarray studies. Is affected by thirteen chemicals including methylmercuric chloride; Psoralens; and allantoin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box associated; F-box associated domain, type 2; and F-box domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: F55C9.4
    Corresponding_transcript: F55C9.4.1
    Associated_feature: WBsf647706
      WBsf1003203
      WBsf1003204
      WBsf1021710
      WBsf1021711
  Experimental_info: RNAi_result: WBRNAi00032873 Inferred_automatically: RNAi_primary
      WBRNAi00015718 Inferred_automatically: RNAi_primary
      WBRNAi00048485 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027623
      Expr1034412
      Expr1152277
      Expr2011658
      Expr2029897
    Drives_construct: WBCnstr00031667
    Construct_product: WBCnstr00031667
    Microarray_results (15)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00045420:fertilization_upregulated_transcript
      WBPaper00050015:ifg-1(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00053888:drh-3(rrr2)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056167:Cry5B_upregulated
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00058948:PA14_upregulated
      WBPaper00059224:tph-1(mg280)_upregulated
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059728:5ug_cholesterol_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00061040:eat-2(ad1116)_upregulated
      WBPaper00061340:G2_and_W_blasts
      WBPaper00061340:Parent_of_exc_gland_AVK
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_downregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061527:ZK1053.4-C08F1.6
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062456:doxycycline_downregulated_N2_transcript
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064156:lipl-4(overexpress)_downregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00064999:miR-229-64-65-66_upregulated
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065005:sams-4(RNAi)_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day1_25C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066093:E.coli-purE_downregulated
      WBPaper00066110:Cisplatin_downregulated_diploid
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
      cgc4386_cluster_6_4
      cgc4489_group_7
      WBPaper00025032:cluster_9
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_D
      WBPaper00037695:WC_5-day
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00041939:control_vs_UVC-exposed_3h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:cluster_7
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(122_min)
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SET
      [cgc5767]:expression_class_SE_pi(23_min)
    Interaction (214)
  Map_info: Map: V Position: 20.8981 Error: 0.017067
    Positive: Positive_clone: F55C9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene