WormBase Tree Display for Gene: WBGene00007674

WBGene00007674 SMap: S_parent: Sequence: C18D4
  Identity: Version: 2
    Name: Sequence_name: C18D4.4
      Molecular_name: C18D4.4a
        C18D4.4a.1
        CE47715
        C18D4.4b
        CE47725
        C18D4.4c
        CE47733
        C18D4.4b.1
        C18D4.4c.1
      Other_name: CELE_C18D4.4 Accession_evidence: NDB BX284605
      Public_name: C18D4.4
    DB_info: Database: AceView gene 5S8
        WormQTL gene WBGene00007674
        WormFlux gene WBGene00007674
        NDB locus_tag CELE_C18D4.4
        NCBI gene 182784
        RefSeq protein NM_001276986.3
            NM_001269816.4
            NM_001269817.2
        TrEMBL UniProtAcc I7LFH4
            I7K4P7
            O45262
        UniProt_GCRP UniProtAcc I7LFH4
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 18 May 2012 15:41:39 WBPerson4025 Event: Split_into: WBGene00219493
      Split_into: WBGene00219493
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (51)
    RNASeq_FPKM (74)
    Ortholog: CSP31.g13822 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g18816 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g18817 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g18819 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g18820 Caenorhabditis uteleia From_analysis: WormBase-Compara
      chrII_pilon.g3178 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (17)
    Structured_description: Automated_description: Enriched in cephalic sheath cell; excretory cell; and neurons based on tiling array and RNA-seq studies. Is affected by several genes including qui-1; etr-1; and rsd-2 based on microarray and RNA-seq studies. Is affected by five chemicals including Psoralens; allantoin; and rifampin based on RNA-seq studies. Is predicted to encode a protein with the following domains: Vitelline membrane outer layer protein I (VOMI) superfamily and Vitelline membrane outer layer protein I (VOMI). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: C18D4.4a
      C18D4.4b
      C18D4.4c
    Corresponding_CDS_history: C18D4.4a:wp232
      C18D4.4b:wp232
    Corresponding_transcript: C18D4.4a.1
      C18D4.4b.1
      C18D4.4c.1
    Associated_feature: WBsf653514
  Experimental_info: RNAi_result: WBRNAi00040930 Inferred_automatically: RNAi_primary
      WBRNAi00029073 Inferred_automatically: RNAi_primary
      WBRNAi00011002 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018947
      Expr1144977
    Drives_construct: WBCnstr00033562
    Construct_product: WBCnstr00033562
    Microarray_results: SMD_C18D4.4
      179503_at
      Aff_C18D4.4
      GPL14144_C18D4.4_154-213_0.950_1_A
      GPL19516_CGZ0005387
      GPL19516_CGZ0005388
      GPL21109_C18D4.4a
      GPL21109_C18D4.4b
      GPL8673_C18D4_4P00103
      GPL8673_C18D4_4P00157
    Expression_cluster: WBPaper00031040:Cluster_5
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:excretory-cell_larva_enriched
      WBPaper00037950:excretory-cell_larva_SelectivelyEnriched
      WBPaper00037950:GABAergic-motor-neurons_larva_SelectivelyEnriched
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038168:lin-35_upregulated
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00044037:eat-2_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:rising_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_upregulated
      WBPaper00045809:rsd-2(yp10)_downregulated
      WBPaper00046012:tdp-1(ok803)_downregulated
      WBPaper00046805:P-granule-RNAi_upregulated_Set1
      WBPaper00049635:dop-1(vs100)_downregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00051137:N.parisii-virus_upregulated_N2
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056167:ifo-1(kc2)_downregulated
      WBPaper00056619:CEPsh_enriched
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00061527:176662_at-Y53F4B.16
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
      WBPaper00062056:lin-15B(we23)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064122:vulva_transcriptome
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:JU1400_N.ironsii_regulated
      WBPaper00065086:JU1400_N.parisii_regulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065086:N2_N.ironsii_regulated
      WBPaper00065086:N2_N.parisii_regulated
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066204:CdCl2_upregulated_mRNA
      cgc4489_group_9
    Interaction (14)
  Map_info: Positive: Positive_clone: C18D4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 12.9178
  Method: Gene