| WBGene00004952 | SMap | S_parent | Sequence | Y34D9A |
|---|
| Identity | Version | 2 |
| | Name | CGC_name | spd-1 | Person_evidence | WBPerson689 |
| | | Sequence_name | Y34D9A.4 |
| | | Molecular_name | Y34D9A.4 |
| | | | Y34D9A.4.1 |
| | | | CE37061 |
| | | Other_name | Y34D9A.d | Curator_confirmed | WBPerson1983 |
| | | | | Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs |
| | | | Y34D9A.e | Curator_confirmed | WBPerson1983 |
| | | | | Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs |
| | | | Y34D9A.h | Curator_confirmed | WBPerson1983 |
| | | | | Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs |
| | | | Y34D9A.i | Curator_confirmed | WBPerson1983 |
| | | | | Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs |
| | | | CELE_Y34D9A.4 | Accession_evidence | NDB | BX284601 |
| | | Public_name | spd-1 |
| | DB_info | Database | AceView | gene | 1B504 |
| | | | WormQTL | gene | WBGene00004952 |
| | | | WormFlux | gene | WBGene00004952 |
| | | | NDB | locus_tag | CELE_Y34D9A.4 |
| | | | Panther | gene | CAEEL|WormBase=WBGene00004952|UniProtKB=G5ED58 |
| | | | | family | PTHR19321 |
| | | | NCBI | gene | 171683 |
| | | | RefSeq | protein | NM_058408.7 |
| | | | TREEFAM | TREEFAM_ID | TF323976 |
| | | | TrEMBL | UniProtAcc | G5ED58 |
| | | | UniProt_GCRP | UniProtAcc | G5ED58 |
| | Species | Caenorhabditis elegans |
| | History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace |
| | | | 2 | 02 Dec 2004 16:55:02 | WBPerson2970 | Event | Acquires_merge | WBGene00021330 |
| | | Acquires_merge | WBGene00021330 |
| | Status | Live |
| Gene_info | Biotype | SO:0001217 |
| | Gene_class | spd |
| | Allele (81) |
| | Legacy_information | [O'Connell KF] Spindle defective, temperature-sensitive sterile, uncoordinated |
| | Complementation_data | [O'Connell KF] mex-3(zu155) |
| | Strain | WBStrain00040350 |
| | RNASeq_FPKM (74) |
| | GO_annotation (22) |
| | Ortholog (32) |
| | Structured_description | Concise_description | spd-1 encodes a homolog of human PRC1, tobacco MAP-65, and S. cerevisiae Ase1p that is required for embryonic viability due to its requirement for mitotic spindle stability during the late stages of cytokinesis; SPD-1 is also required for fertility, gonad development, locomotion, and vulval development. | Paper_evidence | WBPaper00003120 |
| | | | | | WBPaper00012305 |
| | | | | Curator_confirmed | WBPerson567 |
| | | | | | WBPerson48 |
| | | | | Date_last_updated | 17 Jun 2004 00:00:00 |
| | | Automated_description | Enables microtubule binding activity. Involved in several processes, including ciliary body morphogenesis; gonad development; and microtubule bundle formation involved in mitotic spindle midzone assembly. Located in microtubule; mitotic spindle midzone; and nucleus. Is an ortholog of human PRC1 (protein regulator of cytokinesis 1). | Paper_evidence | WBPaper00065943 |
| | | | | Curator_confirmed | WBPerson324 |
| | | | | | WBPerson37462 |
| | | | | Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase |
| | | | | Date_last_updated | 24 Apr 2024 00:00:00 |
| Molecular_info | Corresponding_CDS | Y34D9A.4 |
| | Corresponding_CDS_history | Y34D9A.4:wp126 |
| | Corresponding_transcript | Y34D9A.4.1 |
| | Other_sequence | CR06467 |
| | | CGC01239_1 |
| | | CRC03209_1 |
| | | CR06130 |
| | | CRC00615_1 |
| | | CBC06285_1 |
| | | CR00665 |
| | Associated_feature | WBsf648927 |
| | | WBsf663897 |
| | | WBsf663898 |
| | | WBsf982648 |
| | | WBsf1009178 |
| | | WBsf218952 |
| | | WBsf218953 |
| Experimental_info | RNAi_result (29) |
| | Expr_pattern | Expr3111 |
| | | Expr13888 |
| | | Expr1019167 |
| | | Expr1032466 |
| | | Expr1159359 |
| | | Expr2016024 |
| | | Expr2034259 |
| | Drives_construct | WBCnstr00020440 |
| | Construct_product | WBCnstr00001386 |
| | | WBCnstr00020424 |
| | | WBCnstr00020440 |
| | Antibody | WBAntibody00000779 |
| | | WBAntibody00002645 |
| | | WBAntibody00002784 |
| | Microarray_results (27) |
| | Expression_cluster | WBPaper00038438:Harposporium_24hr_downregulated_RNAseq |
| | | WBPaper00040560:hpl-2_L3_upregulated |
| | | WBPaper00044656:tatn-1(qd182)_downregulated |
| | | WBPaper00044736:flat_dev_expression |
| | | WBPaper00045050:drh-3 (ne4253)_downregulated |
| | | WBPaper00045420:fertilization_downregulated_transcript |
| | | WBPaper00045521:Gender_Neutral |
| | | WBPaper00045571:germline-ablation_downregulated |
| | | WBPaper00045729:gld-2(RNAi)_downregulated |
| | | WBPaper00046509:lin-35(n745)_upregulated |
| | | WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent |
| | | WBPaper00048988:neuron_expressed |
| | | WBPaper00049545:jmjd-3.1(+)_downregulated |
| | | WBPaper00050488:adult_vs_dauer_regulated_N2_20C |
| | | WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C |
| | | WBPaper00050522:mafr-1(tm6082)_downregulated |
| | | WBPaper00050726:OsmoticStress_regulated_Food |
| | | WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult |
| | | WBPaper00050990:arcade_intestinal-valve_enriched |
| | | WBPaper00050990:arcade_intestinal-valve_expressed |
| | | WBPaper00051039:germline_enriched |
| | | WBPaper00051558:aging_regulated |
| | | WBPaper00053289:DREAM-target |
| | | WBPaper00053302:zidovudine_24h_regulated |
| | | WBPaper00053302:zidovudine_72h_regulated |
| | | WBPaper00053388:dauer_regulated_Cluster2 |
| | | WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated |
| | | WBPaper00055103:thoc-5(wy822)_downregulated |
| | | WBPaper00055334:DLC-1_interacting |
| | | WBPaper00055648:germline_expressed |
| | | WBPaper00055862:antimycin_damt-1(gk961032)_regulated |
| | | WBPaper00055971:nhl-2(ok818)_20C_downregulated |
| | | WBPaper00055971:nhl-2(ok818)_25C_upregulated |
| | | WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047) |
| | | WBPaper00056139:soil-microbiota_downregulated |
| | | WBPaper00056165:MINA-1_interacting_mRNA |
| | | WBPaper00056290:hsp-6(mg585)_downregulated |
| | | WBPaper00056443:sek-1(km4)_downregulated |
| | | WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated |
| | | WBPaper00056826:SGP_biased |
| | | WBPaper00057041:spc-1(cas971)_upregulated |
| | | WBPaper00057154:HeatShock_downregulated_mRNA |
| | | WBPaper00057288:Cold_upregulated_transcript |
| | | WBPaper00058598:sin-3(tm1276)_downregulated |
| | | WBPaper00058691:cfp-1(tm6369)_downregulated |
| | | WBPaper00058958:100mGy-irradiation-72h_upregulated |
| | | WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi) |
| | | WBPaper00060445:ikb-1(nr2027)_upregulated_L4 |
| | | WBPaper00060445:nfki-1(cer1)_upregulated_L4 |
| | | WBPaper00060459:bcat-1(RNAi)_downregulated |
| | | WBPaper00060661:sensory-neuron_depleted |
| | | WBPaper00060683:hlh-11(ko1)_downregulated |
| | | WBPaper00060811:L1_vs_adult_downregulated_neural |
| | | WBPaper00060909:atfs-1(cmh15)_upregulated |
| | | WBPaper00061007:S.aquatilis_downregulated |
| | | WBPaper00061203:let-418(n3536)_upregulated |
| | | WBPaper00061203:sin-3(tm1276)_upregulated |
| | | WBPaper00061274:hypergravity_15xg_upregulated |
| | | WBPaper00061274:microgravity_upregulated |
| | | WBPaper00061340:AVH_parent |
| | | WBPaper00061340:Neuroblast_AFD_RMD |
| | | WBPaper00061340:Neuroblast_PVC_LUA |
| | | WBPaper00061340:Parents_of_PHsh_hyp8_hyp9 |
| | | WBPaper00061340:Parent_of_exc_gland_AVK |
| | | WBPaper00061439:unc-30(ok613)_upregulated |
| | | WBPaper00061527:let-99_22121-B0238.9_11154 |
| | | WBPaper00061692:acivicin_downregulated |
| | | WBPaper00061753:csr-1(tor159)_upregulated_20C |
| | | WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR |
| | | WBPaper00062056:lin-35(n745)_upregulated |
| | | WBPaper00062159:hda-2(ok1479)_downregulated |
| | | WBPaper00062325:muscle_depleted_coding-RNA |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141) |
| | | WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141) |
| | | WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20) |
| | | WBPaper00064107:lin-35(n745)_upregulated |
| | | WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated |
| | | WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs |
| | | WBPaper00064716:paraquat_upregulated |
| | | WBPaper00065149:lin-52(n771)_upregulated |
| | | WBPaper00065984:pals-17(syb3980)_upregulated |
| | | WBPaper00065993:glp-1(e2141)_downregulated |
| | | WBPaper00066110:tetraploid_vs_diploid_downregulated |
| | | WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14 |
| | | cgc4386_cluster_4_1 |
| | | cgc4489_group_1 |
| | | WBPaper00005124:testosterone_10-9M_regulated |
| | | WBPaper00025032:cluster_30 |
| | | WBPaper00025032:cluster_36 |
| | | WBPaper00025141:N2_Expressed_Genes |
| | | WBPaper00025141:unc-4::GFP_Expressed_Genes |
| | | WBPaper00026929:sir-2.1_overexpression_regulated |
| | | WBPaper00029437:dcr-1_downregulated |
| | | WBPaper00031832:slr-2_regulated |
| | | WBPaper00035873:dpy-10_regulated |
| | | WBPaper00035905:FBF-1_Associated |
| | | WBPaper00036286:Pattern_B |
| | | WBPaper00038060:SUMO-1_upregulated |
| | | WBPaper00040876:mir-35_upregulated |
| | | WBPaper00041606:CE_B.thuringiensis-DB27_regulated |
| | | WBPaper00041606:CE_S.marcescens_regulated |
| | | WBPaper00041606:CE_X.nematophila_regulated |
| | | WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h |
| | | WBPaper00042331:a-SWCNTs_downregulated |
| | | WBPaper00045263:0.1mM-paraquat_upregulated |
| | | WBPaper00045263:isp-1(qm150)_upregulated |
| | | WBPaper00048637:lin-35(n745)_starvation_upregulated |
| | | WBPaper00048989:eat-2(ad465)_rapamycin_upregulated |
| | | WBPaper00053236:Starvation_regulated_GR1307 |
| | | WBPaper00053236:Starvation_regulated_N2 |
| | | WBPaper00055435:AuNPs_downregulated |
| | | WBPaper00056330:mrps-5(RNAi)_downregulated |
| | | [cgc5767]:cluster_2 |
| | | [cgc5767]:cluster_13 |
| | | [cgc5767]:expression_class_E |
| | | [cgc5767]:expression_class_E_pi(53_min) |
| | | [cgc5767]:expression_class_E_pi(83_min) |
| | | [cgc5767]:expression_class_M |
| | | [cgc5767]:expression_class_ME |
| | | [cgc5767]:expression_class_SE |
| | | [cgc5767]:expression_class_SE_pi(83_min) |
| | | [cgc6390]:Cluster_F |
| | | [cgc6390]:intrinsic |
| | Interaction (34) |
| Map_info | Map | I | Position | -17.3859 | Error | 0.032529 |
| | Positive | Inside_rearr | hDf10 |
| | | Positive_clone | Y34D9A | Inferred_automatically | From sequence, transcript, pseudogene data |
| | Mapping_data | Multi_point | 3659 |
| | | | 3660 |
| | | Pos_neg_data | 9376 |
| Reference (38) |
| Method | Gene |
