WormBase Tree Display for Gene: WBGene00004899

WBGene00004899 SMap: S_parent: Sequence: C30A5
  Identity: Version: 1
    Name: CGC_name: snb-5
      Sequence_name: C30A5.5
      Molecular_name: C30A5.5
        C30A5.5.1
        CE00096
      Other_name: CELE_C30A5.5 Accession_evidence: NDB BX284603
      Public_name: snb-5
    DB_info: Database: AceView gene 3J295
        WormQTL gene WBGene00004899
        WormFlux gene WBGene00004899
        NDB locus_tag CELE_C30A5.5
        Panther gene CAEEL|WormBase=WBGene00004899|UniProtKB=P34351
          family PTHR45701
        NCBI gene 191767
        RefSeq protein NM_066389.3
        SwissProt UniProtAcc P34351
        UniProt_GCRP UniProtAcc P34351
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snb
    Allele (16)
    Strain: WBStrain00036148
    RNASeq_FPKM (74)
    GO_annotation: 00039782
      00039783
      00039784
      00039785
      00039786
      00108080
      00108081
    Ortholog (25)
    Paralog: WBGene00014084 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00044062 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00004897 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004898 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007200 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015164 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018853 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022077 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: snb-5 encodes a predicted synaptobrevin. Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in vesicle fusion. Predicted to be located in plasma membrane. Predicted to be part of SNARE complex. Is an ortholog of human VAMP7 (vesicle associated membrane protein 7). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: C30A5.5
    Corresponding_transcript: C30A5.5.1
    Associated_feature: WBsf1015369
      WBsf225369
  Experimental_info: RNAi_result: WBRNAi00011374 Inferred_automatically: RNAi_primary
      WBRNAi00006927 Inferred_automatically: RNAi_primary
      WBRNAi00007112 Inferred_automatically: RNAi_primary
      WBRNAi00041520 Inferred_automatically: RNAi_primary
      WBRNAi00029344 Inferred_automatically: RNAi_primary
      WBRNAi00041521 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019042
      Expr1145543
      Expr2015941
      Expr2034174
    Drives_construct: WBCnstr00035335
    Construct_product: WBCnstr00035335
    Microarray_results (18)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00038237:age-1_upregulated_intestine_rescue
      WBPaper00038237:age-1_upregulated_neuron_rescue
      WBPaper00038237:age-1_upregulated_nontransgenic
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00041071:spe-44_downregulated
      WBPaper00044736:rising_dev_expression
      WBPaper00045521:Spermatogenic
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00050231:male_enriched
      WBPaper00050743:elli-1(sam-3)_upregulated
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:flcn-1(ok975)_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061527:C01G10.14-dct-9_3227
      WBPaper00061613:human-alpha-Synuclein(A53T)_downregulated
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_downregulated
      WBPaper00061613:human-amyloid-beta_downregulated
      WBPaper00061853:osm-3(dh441)_downregulated_tunicamycin
      WBPaper00062193:daf-16(RNAi)_upregulated
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00062672:let-418(n3536)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064502:spe-44(fx110)_downregulated
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064632:daf-2(e1370)_downregulated_intestine
      WBPaper00064716:paraquat_downregulated
      WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066485:ogt-1_upregulated_neuron
      WBPaper00066511:adr-1(tm668)_downregulated
      cgc4489_group_14
      cgc4489_male_enriched_neuronal_genes
      WBPaper00036286:Pattern_E
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00038172:tax-6null_down_regulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_old
      WBPaper00042236:flcn-1(ok975)_upregulated
      WBPaper00042258:DA1877_upregulated_GravidAdult
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
    Interaction: WBInteraction000262780
      WBInteraction000293331
      WBInteraction000320422
      WBInteraction000420370
      WBInteraction000443696
      WBInteraction000444429
      WBInteraction000461826
  Map_info: Map: III Position: -0.368385 Error: 0.002112
    Positive: Positive_clone: C30A5 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5150
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene