WormBase Tree Display for Gene: WBGene00003609

WBGene00003609 Evidence: Paper_evidence: WBPaper00003416
  SMap: S_parent: Sequence: B0280
  Identity: Version: 1
    Name: CGC_name: nhr-10 Person_evidence: WBPerson600
      Sequence_name: B0280.8
      Molecular_name: B0280.8
        B0280.8.1
        CE00815
      Other_name: CELE_B0280.8 Accession_evidence: NDB BX284603
      Public_name: nhr-10
    DB_info: Database: AceView gene 3I202
        WormQTL gene WBGene00003609
        WormFlux gene WBGene00003609
        NDB locus_tag CELE_B0280.8
        Panther gene CAEEL|WormBase=WBGene00003609|UniProtKB=P41999
          family PTHR24083
        NCBI gene 175993
        RefSeq protein NM_066153.7
        SwissProt UniProtAcc P41999
        TREEFAM TREEFAM_ID TF321623
        UniProt_GCRP UniProtAcc P41999
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (35)
    Legacy_information: NMK. Nuclear hormone receptor superfamily.[GR]
      [C.elegansII] NMK. Nuclear hormone receptor superfamily. Sequenced: B0280.8. [GR]
    Strain: WBStrain00034789
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (30)
    Paralog (216)
    Structured_description: Concise_description: nhr-10 encodes a predicted nuclear hormone receptor diverged from nuclear hormone receptors in other phyla; its mRNA is expressed throughout development with possibly lower expression from the L4 larval to adult stages, and the protein is expressed in neuronal processes. Paper_evidence: WBPaper00003416
            WBPaper00005573
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in regulation of transcription by RNA polymerase II. Part of chromatin. Expressed in intestine. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: B0280.8
    Corresponding_transcript: B0280.8.1
    Other_sequence: CGC00280_1
      JI232570.1
      FC814817.1
      CBC09662_1
      JI219127.1
      CRC02082_1
      JO467980.1
      CR10871
      CR01764
    Associated_feature: WBsf716546
      WBsf978506
      WBsf992940
      WBsf1015194
      WBsf226906
      WBsf226907
    Gene_product_binds (307)
    Transcription_factor: WBTranscriptionFactor000566
  Experimental_info: RNAi_result (17)
    Expr_pattern: Expr15771
      Expr1013269
      Expr1031656
      Expr1143047
      Expr1200357
      Expr2014007
      Expr2032247
    Drives_construct: WBCnstr00021139
      WBCnstr00036004
      WBCnstr00042514
    Construct_product: WBCnstr00016577
      WBCnstr00016728
      WBCnstr00036004
    Microarray_results (21)
    Expression_cluster: WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_embryo_enriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:flat_dev_expression
      WBPaper00045486:starvation_downregulated
      WBPaper00045521:Oogenic
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050094:mes-2(bn11)_upregulated
      WBPaper00050094:mes-6(bn66)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051257:Levamisole_upregulated
      WBPaper00051265:F4_hrde-1(tm1200)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot267)_downregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00054192:cold-shock_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00056218:daf-16(mu86)_upregulated_Day7
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059440:GLP-1_represseded
      WBPaper00059440:LAG-1_repressed_48hr-auxin
      WBPaper00059471:EGL-43_interacting
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:cdc-42_17192-rab-5_18073
      WBPaper00061527:F08G12.1_2283-cst-1_319
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064315:mes-3(bn199)_upregulated_PGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064716:paraquat_downregulated
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065841:5_0
      WBPaper00065841:9_1
      WBPaper00065841:15_0
      WBPaper00065841:27_0
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      cgc4489_group_10
      WBPaper00025032:cluster_22
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00032948:StarveUp2
      WBPaper00034739:N2moreDR1350
      WBPaper00036286:Pattern_F
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00038172:aak-2overexpression_down_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041960:daf-16_fasting_upregulated
      WBPaper00041960:jun-1_fasting_upregulated
      WBPaper00041960:kgb-1_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00055899:nitroguanidine_regulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(83_min)
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
    Interaction (58)
    Product_binds_matrix: WBPmat00005560
      WBPmat00005561
      WBPmat00005575
  Map_info: Map: III Position: -0.790395 Error: 0.000401
    Positive: Positive_clone: B0280 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (16)
  Remark: Map III Position -0.700000
    B0280.3 removed. letter from Ann Sluder : E.coli 'homologue'
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene