WormBase Tree Display for Gene: WBGene00000694

WBGene00000694 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: Y11D7A
  Identity: Version: 1
    Name: CGC_name: col-120 Person_evidence: WBPerson345
      Sequence_name: Y11D7A.11
      Molecular_name: Y11D7A.11
        Y11D7A.11.1
        CE20194
      Other_name: CELE_Y11D7A.11 Accession_evidence: NDB BX284604
      Public_name: col-120
    DB_info: Database: AceView gene 4K26
        WormQTL gene WBGene00000694
        WormFlux gene WBGene00000694
        NDB locus_tag CELE_Y11D7A.11
        NCBI gene 177748
        RefSeq protein NM_069216.7
        TrEMBL UniProtAcc Q9XWR2
        UniProt_GCRP UniProtAcc Q9XWR2
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (22)
    Strain: WBStrain00050969
    RNASeq_FPKM (74)
    GO_annotation: 00098642
      00098643
      00102459
    Ortholog (33)
    Paralog (161)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: Y11D7A.11
    Corresponding_transcript: Y11D7A.11.1
    Other_sequence: CJC01511_1
      JO473049.1
      FG582665.1
      JI475967.1
      JI179731.1
    Associated_feature: WBsf230534
  Experimental_info: RNAi_result: WBRNAi00007438 Inferred_automatically: RNAi_primary
      WBRNAi00055532 Inferred_automatically: RNAi_primary
      WBRNAi00036636 Inferred_automatically: RNAi_primary
      WBRNAi00020044 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025585
      Expr1030415
      Expr1159030
      Expr2010317
      Expr2028561
    Drives_construct: WBCnstr00037362
    Construct_product: WBCnstr00037362
    Microarray_results (18)
    Expression_cluster: WBPaper00024375:Up_vhl-1_vs_hif-1_vhl-1
      WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:hypodermis_larva_SelectivelyEnriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038118:stress_upregulated_N2
      WBPaper00040285:H2S_24hr_downregulated
      WBPaper00040990:PA14_downregulated
      WBPaper00041954:ethanol_upregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00044260:1-methylnicotinamide_upregulated
      WBPaper00044260:nicotinc-acid_upregulated
      WBPaper00044316:HgCl2_20uM_downregulated
      WBPaper00044426:rotenone_5day_downregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:rising_dev_expression
      WBPaper00044786:emr-1(gk119)_upregulated
      WBPaper00045017:blmp-1(tm548)_downregulated
      WBPaper00045257:bar-1(ga80)_downregulated
      WBPaper00045316:prg-1_downregulated_L4
      WBPaper00045316:prg-1_upregulated_L1
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00045971:tunicamycin_upregulated_RtcB(null)
      WBPaper00046024:sleep_upregulated_oscillating
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046499:AMPK_regulated
      WBPaper00046527:glucose_upregulated
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00047132:glp-1(ts)-25C_upregulated_skn-1-dependent
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048988:daf-2(e1370)_downregulated_neuron
      WBPaper00048988:daf-16(mu86)_upregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049489:AMsh-glia_enriched
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00049920:hyl-2(tm2031)_upregulated
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050080:rbr-2(tm3141)_upregulated
      WBPaper00050109:rBmTX14_upregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050717:let-7(n2853)_lin-41(xe11)_downregulated
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00051265:F4_hrde-1(tm1200)_downregulated
      WBPaper00051265:F4_morc-1(tm6048)_downregulated
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053023:nrx-1(tm1961);nlg-1(ok259)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00054872:egl-9(sa307)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055013:hmg-4(RNAi)_downregulated
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055897:heat-shock_upregulated
      WBPaper00055941:nuo-6(qm200)_downregulated
      WBPaper00055944:C.butyricum_vs_OP50_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056167:Cry5B_downregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_adult
      WBPaper00056330:glycine_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058801:ceh-60(lst466)_downregulated_protein
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059191:hsp-16.2p-LIN-29_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059373:stt-3(RNAi)_downregulated
      WBPaper00059426:SiO2-nanoparticles_upregulated
      WBPaper00059605:mut-16(pk710)_upregulated
      WBPaper00059739:hira-1(gk835598)_downregulated_L4
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00059816:crh-1(n3315)_uprgulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060273:vrk-1(RNAi)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060526:plp-1(ok2155)_upregulated
      WBPaper00060661:hypoxia_downregulated
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060703:nas-38(ok3407)_downregulated
      WBPaper00060764:swsn-1(os22ts)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060871:M.humicola-extract_1h_regulated
      WBPaper00060871:M.humicola-infection_48h_regulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:HB115_upregulated
      WBPaper00061007:M.braciatum_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061007:X.citri_upregulated
      WBPaper00061040:eat-2(ad1116)_downregulated
      WBPaper00061081:skpo-1(ok1640)_upregulated_OG1RF
      WBPaper00061081:skpo-1(ok1640)_upregulated_OP50
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061527:col-138-col-49
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062197:mec-8_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062347:blmp-1(tm548)_downregulated
      WBPaper00062456:doxycycline_upregulated_N2_protein
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00062590:Aging_downregulated_body-wall-muscle
      WBPaper00062715:blmp-1(s71)_downregulated
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064156:lipl-4(overexpress)_upregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064494:postdauer_downregulated_WholeAnimal
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064727:daf-2(e1370)_upregulated
      WBPaper00064728:cpl-1(W32AY35A)_upregulated
      WBPaper00064788:ketamine_upregulated
      WBPaper00064871:hypoxia_upregulated_F1
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065074:glna(-)_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065578:gcn-1(nc40)_upregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065623:26
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065841:34_0
      WBPaper00065841:34_1
      WBPaper00065841:64_0
      WBPaper00065841:82_0
      WBPaper00065926:pgph-2(overepxreesion)_upregulated
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00066004:tdp-1(csb38)_upregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066093:E.coli-purE_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066485:ogt-1_downregulated_WholeAnimal
      cgc4386_cluster_1_1
      cgc4489_group_1
      WBPaper00006465:IV_ethanol_late_repression
      WBPaper00025099:MA_specific
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030985:Enterococcus_faecalis_downregulated
      WBPaper00030985:Photorhabdus_luminescens_downregulated
      WBPaper00031184:acrylamide_upregulated
      WBPaper00032062:age_regulated_genes
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035873:osm-8_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_C
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00037113:CPF_16C_down-regulated
      WBPaper00038060:SUMO-1_downregulated
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00038172:crh-1null_down_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00038304:octr-1_regulated
      WBPaper00040210:Chlorpyrifos_16C_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040963:Q50_up
      WBPaper00040963:Q100_up
      WBPaper00040963:Q200_up
      WBPaper00042178:hlh-29(tm284)_downregulated
      WBPaper00042258:DA1877_downregulated_YoungAdult
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00050515:nipi-3(fr4)_upregulated
      WBPaper00050650:mBmkTX_upregulated
      [cgc6390]:Cluster_C
    Interaction (70)
  Map_info: Map: IV Position: 4.11653 Error: 0.001561
    Positive: Positive_clone: Y11D7A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00006465
    WBPaper00038491
    WBPaper00055090
    WBPaper00064727
    WBPaper00064977
    WBPaper00065859
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene