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WormBase Tree Display for Gene: WBGene00000597

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Name Class

WBGene00000597SMapS_parentSequenceF11H8
IdentityVersion1
NameCGC_namecol-8Person_evidenceWBPerson345
Sequence_nameF11H8.3
Molecular_nameF11H8.3
F11H8.3.1
CE51260
Other_namecol8Accession_evidenceEMBLM25479
CELE_F11H8.3Accession_evidenceNDBBX284603
Public_namecol-8
DB_infoDatabaseAceViewgene3I110
WormQTLgeneWBGene00000597
WormFluxgeneWBGene00000597
NDBlocus_tagCELE_F11H8.3
PanthergeneCAEEL|WormBase=WBGene00000597|UniProtKB=P18833
familyPTHR24637
NCBIgene175981
RefSeqproteinNM_001382906.2
SwissProtUniProtAccP18833
TREEFAMTREEFAM_IDTF319043
UniProt_GCRPUniProtAccP18833
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
Allele (23)
Legacy_informationTranscript present in dauer larvae and adults.
[C.elegansII] NMK. Transcript present in dauer larvae and adults;not detected in egg or L4. Encodes collagen,col-8 family includes col-19,35,39. [Cox and Hirsh 1985]
RNASeq_FPKM (74)
GO_annotation00037600
00037601
00102384
Ortholog (37)
Paralog (165)
Structured_descriptionConcise_descriptioncol-8 encodes a collagen, individually dispensable for viability and gross morphology, which is specifically expressed in dauers and adults but not in eggs or L4 larvae, like col-7, col-18, and col-19; the amino- and carboxyl-terminal cysteine-rich regions of COL-8 are most closely related to those of COL-19, COL-35, and COL-39.Paper_evidenceWBPaper00000748
WBPaper00001918
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Modifies_diseaseDOID:10652
Modifies_disease_in_annotationWBDOannot00001520
Molecular_infoCorresponding_CDSF11H8.3
Corresponding_CDS_historyF11H8.3:wp252
Corresponding_transcriptF11H8.3.1
Other_sequence (53)
Associated_featureWBsf226890
Experimental_infoRNAi_resultWBRNAi00007476Inferred_automaticallyRNAi_primary
WBRNAi00044419Inferred_automaticallyRNAi_primary
WBRNAi00013152Inferred_automaticallyRNAi_primary
WBRNAi00005369Inferred_automaticallyRNAi_primary
Expr_patternExpr765
Expr1022298
Expr1030349
Expr1148367
Expr2010436
Expr2028676
Drives_constructWBCnstr00037438
Construct_productWBCnstr00037438
Microarray_results (18)
Expression_clusterWBPaper00032031:DConiospora_downregulated_cDNA_12h
WBPaper00032031:DConiospora_downregulated_cDNA_24h
WBPaper00032031:DConiospora_downregulated_OligoArray_24h
WBPaper00035269:cde-1_regulated
WBPaper00037682:sma-2_sma-4_downregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_adult_enriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_embryo_enriched
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038237:age-1_upregulated_intestine_rescue
WBPaper00038237:age-1_upregulated_neuron_rescue
WBPaper00038237:age-1_upregulated_nontransgenic
WBPaper00038438:P.lumniescens_24hr_downregulated_TilingArray
WBPaper00040446:insoluble_protein
WBPaper00041954:ethanol_upregulated
WBPaper00042215:wdr-23(tm1817)_downregulated
WBPaper00043951:insoluble_protein_day16_N2
WBPaper00044037:eat-2_downregulated
WBPaper00044260:1-methylnicotinamide_downregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044557:DietaryRestriction_downregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:rising_dev_expression
WBPaper00044760:germline_specific
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045017:blmp-1(tm548)_downregulated
WBPaper00045316:prg-1_downregulated_L2
WBPaper00045316:prg-1_downregulated_L4
WBPaper00045401:N.parisii_64h_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_upregulated
WBPaper00045861:wdr-5(ok1417)_downregulated
WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_upregulated
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046795:starvation_downregulated
WBPaper00046805:P-granule-RNAi_upregulated_Set1
WBPaper00048611:MnCl2_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049635:dop-1(vs100)_downregulated
WBPaper00049732:blmp-1(tm548)_vs_N2_upregulated
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
WBPaper00050412:cco-1(RNAi)_downregulated_lin-65(n3441)
WBPaper00050412:cco-1(RNAi)_downregulated_N2
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050686:glp-1(e2141)_upregulated
WBPaper00050717:let-7(n2853)_lin-41(xe11)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:seam_expressed
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00051305:vit-2(ac3)_downregulated
WBPaper00051352:Long-Term-Association-Memory_downregulated
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00051404:alg-2(ok304)_upregulated
WBPaper00053023:nlg-1(ok259)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053318:Aging_downregulated_mRNA_N2
WBPaper00053599:female_vs_male_downregulated
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00053814:15C_downregulated_PY79
WBPaper00053814:25C_downregulated_OP50
WBPaper00054192:cold-shock_downregulated
WBPaper00054410:set-9(rw5)_downregulated
WBPaper00054410:set-26(tm2467)_downregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054872:egl-9(sa307)_downregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055060:flr-1(RNAi)_downregulated
WBPaper00055103:thoc-5(wy822)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055565:AVK_enriched
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055941:atfs-1(et15)_downregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056218:daf-16(mu86)_downregulated_Day5
WBPaper00056218:daf-16(mu86)_downregulated_Day7
WBPaper00056284:ints-1(RNAi)_upregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056586:mpk-2(ok219)_upregulated
WBPaper00056855:his-72(uge40)_upregulated
WBPaper00056868:P.aeruginosa_downregulated_smallRNA
WBPaper00056997:nmad-1(ok3133)_downregulated_germline_20C
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00057154:HeatShock_upregulated_miRNA-target
WBPaper00057288:Cold_upregulated_transcript
WBPaper00058598:mex-1(or286)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058711:paraquat_upregulated
WBPaper00058711:skn-1(lax188)_downregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_PA14
WBPaper00058948:PA14_upregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00059117:B.subtilis_downregulated
WBPaper00059191:hsp-16.2p-LIN-29_upregulated
WBPaper00059194:klf-1(RNAi)_regulated
WBPaper00059253:stearic-acid_downregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_protein
WBPaper00059334:sacy-1(depletion)_regulated
WBPaper00059334:SACY-1_interacting
WBPaper00059356:set-6(ok2195)_baz-2(tm0235)_regulated
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_upregulated
WBPaper00059605:MUT-16_interacting
WBPaper00059739:hira-1(gk835598)_downregulated_adult
WBPaper00059763:neuron_acr-2(n2420gf)_regulated
WBPaper00059816:crh-1(n3315)_downrgulated
WBPaper00059895:wounding_downregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060084:cco-1(RNAi)_downregulated_lin-40(yth27)
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00060909:atfs-1(et18)_upregulated
WBPaper00060911:prx-5(RNAi)_downregulated_mRNA
WBPaper00060921:cat-2(e1112)_downregulated
WBPaper00060921:tdc-1(n3419)_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061007:X.citri_downregulated
WBPaper00061081:E.faecalis_downregulated_N2
WBPaper00061081:E.faecalis_downregulated_skpo-1(ok1640)
WBPaper00061274:hypergravity_15xg_upregulated
WBPaper00061340:AIN
WBPaper00061340:AIN_parent
WBPaper00061340:ALN
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061390:daf-22(ok693)_ascarosides_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061479:hda-1(ne4747)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:col-178-col-19
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061653:alh-4(hj221)_downregulated
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062184:PA14_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062354:H.zoospora_12h_regulated
WBPaper00062440:crh-1(syb385)_upregulated
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062456:doxycycline_downregulated_N2_protein
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00062534:fat-P-80_upregulated
WBPaper00062590:Aging_downregulated_body-wall-muscle
WBPaper00062669:extracellular-vesicle_protein
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_downregulated
WBPaper00063976:micu-1(bon20)_upregulated
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064130:Beta-Amyloid_upregulated_protein
WBPaper00064156:lbp-3(overexpress)_downregulated
WBPaper00064156:lipl-4(overexpress)_downregulated
WBPaper00064494:postdauer_downregulated_WholeAnimal
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064769:him-17(me24)_upregulated
WBPaper00064789:Day12_vs_Day1_upregulated_neuron
WBPaper00064841:tent-5(tm3504)_downregulated_transcript
WBPaper00064850:glh-1(sam65)_downregulated
WBPaper00064871:hypoxia_upregulated_F3
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065029:cadmium_downregulated
WBPaper00065074:glna(-)_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065132:asna-1(ok938)_downregulated_protein
WBPaper00065288:mdt-15(tm2182)_upregulated
WBPaper00065392:Lb.reuteri_upregulated
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065623:34
WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_upregulated_N2
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
WBPaper00065841:0_0
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066118:cyclobutrifluram_downregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066410:mbl-1(syb4345)_downregulated
WBPaper00066485:ogt-1_downregulated_WholeAnimal
cgc4386_cluster_2_1
cgc4489_group_9
WBPaper00005124:progesterone_10-7M_regulated
WBPaper00005124:testosterone_10-9M_regulated
WBPaper00025099:MA_specific
WBPaper00025099:NI_specific
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00030985:Enterococcus_faecalis_downregulated
WBPaper00030985:Erwinia_carotovora_downregulated
WBPaper00030985:Photorhabdus_luminescens_downregulated
WBPaper00030985:Serratia_marcesens_downregulated
WBPaper00031060:2-deoxy-D-glucose_upregulated
WBPaper00031184:acrylamide_upregulated
WBPaper00032062:age_regulated_genes
WBPaper00034757:down_by_oxidative_stress
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_D
WBPaper00038060:SUMO-1_upregulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00038462:aging_downregulated
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040858:eQTL_regulated_developing
WBPaper00040963:TA300_down
WBPaper00041002:HF_11d_2.0mM_Up
WBPaper00041002:HQ_3d_2.0mM_Down
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041939:control_vs_UVC-exposed_48h
WBPaper00044535:male_downregulated
WBPaper00045015:nhr-25(RNAi)_downregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00046083:oga-1(ok1207)_OP50_upregulated
WBPaper00046083:ogt-1(ok1474)_OP50_upregulated
WBPaper00046083:pmk-1(km25)_OP50_upregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00051387:Triclosan_downregulated
WBPaper00057098:SiO2-nanoparticles_downregulated
Interaction (104)
Map_infoMapIIIPosition-0.848504Error0.000667
PositivePositive_cloneCOL8
F11H8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (24)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene