WormBase Tree Display for Gene: WBGene00012781
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WBGene00012781 | SMap | S_parent | Sequence | Y43C5A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nspd-7 | Person_evidence | WBPerson1983 | |||||
Sequence_name | Y43C5A.1 | ||||||||
Molecular_name | Y43C5A.1 | ||||||||
Y43C5A.1.1 | |||||||||
CE19150 | |||||||||
Other_name | CELE_Y43C5A.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | nspd-7 | ||||||||
DB_info | Database | AceView | gene | 4L34 | |||||
WormQTL | gene | WBGene00012781 | |||||||
WormFlux | gene | WBGene00012781 | |||||||
NDB | locus_tag | CELE_Y43C5A.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012781|UniProtKB=Q9XXF2 | |||||||
family | PTHR35375 | ||||||||
NCBI | gene | 177910 | |||||||
RefSeq | protein | NM_069481.6 | |||||||
TREEFAM | TREEFAM_ID | TF319437 | |||||||
TrEMBL | UniProtAcc | Q9XXF2 | |||||||
UniProt_GCRP | UniProtAcc | Q9XXF2 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 03 Oct 2006 09:54:22 | WBPerson2970 | Name_change | CGC_name | nspd-7 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nspd | ||||||||
Allele | WBVar01966902 | ||||||||
WBVar01500079 | |||||||||
WBVar00936687 | |||||||||
WBVar00936688 | |||||||||
WBVar01498996 | |||||||||
WBVar01499925 | |||||||||
WBVar02121029 | |||||||||
WBVar02123245 | |||||||||
WBVar02123089 | |||||||||
WBVar02121441 | |||||||||
WBVar00433752 | |||||||||
WBVar02146296 | |||||||||
WBVar02151040 | |||||||||
WBVar01500245 | |||||||||
WBVar00574096 | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (99) | |||||||||
Paralog | WBGene00010633 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00017808 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00017386 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00020715 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
WBGene00021280 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00043147 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
WBGene00022754 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00020860 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00016058 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Enriched in germ line; intestine; sperm; and in male based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including numr-2; numr-1; and mut-16 based on microarray and RNA-seq studies. Is affected by twenty-six chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y43C5A.1 | |||||||
Corresponding_transcript | Y43C5A.1.1 | ||||||||
Other_sequence | FG621270.1 | ||||||||
Associated_feature | WBsf997580 | ||||||||
WBsf230707 | |||||||||
Experimental_info | RNAi_result | WBRNAi00020518 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00007326 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00110638 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00056460 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022554 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1011315 | ||||||||
Expr1159933 | |||||||||
Expr2014484 | |||||||||
Expr2032723 | |||||||||
Drives_construct | WBCnstr00029845 | ||||||||
Construct_product | WBCnstr00029845 | ||||||||
Microarray_results (14) | |||||||||
Expression_cluster (223) | |||||||||
Interaction (107) | |||||||||
Map_info | Map | IV | Position | 4.56484 | |||||
Positive | Positive_clone | Y43C5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |