WormBase Tree Display for Gene: WBGene00000597
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| WBGene00000597 | SMap | S_parent | Sequence | F11H8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-8 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F11H8.3 | ||||||||
| Molecular_name | F11H8.3 | ||||||||
| F11H8.3.1 | |||||||||
| CE51260 | |||||||||
| Other_name | col8 | Accession_evidence | EMBL | M25479 | |||||
| CELE_F11H8.3 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | col-8 | ||||||||
| DB_info | Database | AceView | gene | 3I110 | |||||
| WormQTL | gene | WBGene00000597 | |||||||
| WormFlux | gene | WBGene00000597 | |||||||
| NDB | locus_tag | CELE_F11H8.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000597|UniProtKB=P18833 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 175981 | |||||||
| RefSeq | protein | NM_001382906.2 | |||||||
| SwissProt | UniProtAcc | P18833 | |||||||
| TREEFAM | TREEFAM_ID | TF319043 | |||||||
| UniProt_GCRP | UniProtAcc | P18833 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele | WBVar01499890 | ||||||||
| WBVar01499891 | |||||||||
| WBVar01500260 | |||||||||
| WBVar00400914 | |||||||||
| WBVar00400915 | |||||||||
| WBVar00400916 | |||||||||
| WBVar00400917 | |||||||||
| WBVar00400918 | |||||||||
| WBVar01499774 | |||||||||
| WBVar00836970 | |||||||||
| WBVar00836971 | |||||||||
| WBVar00836972 | |||||||||
| WBVar00836973 | |||||||||
| WBVar00836974 | |||||||||
| WBVar00836975 | |||||||||
| WBVar00836976 | |||||||||
| WBVar00836977 | |||||||||
| WBVar00836978 | |||||||||
| WBVar00836979 | |||||||||
| WBVar00836980 | |||||||||
| WBVar00836981 | |||||||||
| WBVar00836982 | |||||||||
| WBVar02148033 | |||||||||
| Legacy_information | Transcript present in dauer larvae and adults. | ||||||||
| [C.elegansII] NMK. Transcript present in dauer larvae and adults;not detected in egg or L4. Encodes collagen,col-8 family includes col-19,35,39. [Cox and Hirsh 1985] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00037600 | ||||||||
| 00037601 | |||||||||
| 00102384 | |||||||||
| Ortholog (37) | |||||||||
| Paralog (165) | |||||||||
| Structured_description | Concise_description | col-8 encodes a collagen, individually dispensable for viability and gross morphology, which is specifically expressed in dauers and adults but not in eggs or L4 larvae, like col-7, col-18, and col-19; the amino- and carboxyl-terminal cysteine-rich regions of COL-8 are most closely related to those of COL-19, COL-35, and COL-39. | Paper_evidence | WBPaper00000748 | |||||
| WBPaper00001918 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Modifies_disease | DOID:10652 | ||||||||
| Modifies_disease_in_annotation | WBDOannot00001520 | ||||||||
| Molecular_info | Corresponding_CDS | F11H8.3 | |||||||
| Corresponding_CDS_history | F11H8.3:wp252 | ||||||||
| Corresponding_transcript | F11H8.3.1 | ||||||||
| Other_sequence (53) | |||||||||
| Associated_feature | WBsf226890 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00007476 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044419 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013152 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005369 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr765 | ||||||||
| Expr1022298 | |||||||||
| Expr1030349 | |||||||||
| Expr1148367 | |||||||||
| Expr2010436 | |||||||||
| Expr2028676 | |||||||||
| Drives_construct | WBCnstr00037438 | ||||||||
| Construct_product | WBCnstr00037438 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (292) | |||||||||
| Interaction (104) | |||||||||
| Map_info | Map | III | Position | -0.848504 | Error | 0.000667 | |||
| Positive | Positive_clone | COL8 | |||||||
| F11H8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference (24) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
