WormBase Tree Display for Expression_cluster: [cgc6390]:intrinsic
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[cgc6390]:intrinsic | Description | Germline-intrinsic transcripts. | |
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Species | Caenorhabditis elegans | ||
Algorithm | Comparisons were made between genotypes by subtracting the mean log value of one ratio from another, and the significance of the difference was evaluated using Student t-test for two populations. For the fem-3(gf) versus fem-1(lf) direct comparison, authors performed the same analysis, except they used a Students t-test for one population. Author chose a combination of a twofold difference with a t value exceeding 99% confidence (P < 0.01), because these criteria allowed the inclusion of essentially all genes that had previously been identified as germline-enriched in a wt/glp-4 hermaphrodite comparison. Additionally, requiring a twofold difference reduced false positives, as the number of genes with two-fold difference and a P<0.01 only included ~100 genes more than with P < 0.001, and almost all genes showed germline expression by in situ hybridization. | ||
Reference | WBPaper00006390 | ||
Microarray_results (1248) | |||
Gene (1341) | |||
Attribute_of | Microarray_experiment | [cgc6390]:adult_WT_vs_glp-4 | |
[cgc6390]:fem-3(gf)_vs_fem-1(lf) | |||
[cgc6390]:glp-4_hermaphrodites_vs_glp-4_him-5_males | |||
[cgc6390]:hermaphrodites_vs_him-5_males | |||
[cgc6390]:him-5_vs_glp-4_him-5 | |||
[cgc6390]:L4_WT_vs_glp-4 | |||
Remark | These are gene expression categories discussed in the paper. |