WormBase Tree Display for CDS: Y48B6A.1
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| Y48B6A.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y48B6A | |||
| Structure | Source_exons | 1 | 171 | |||
| 223 | 374 | |||||
| 440 | 1130 | |||||
| 1701 | 2609 | |||||
| 2918 | 3019 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q9U2A9 | ||
| UniProt | UniProtAcc | Q9U2A9 | ||||
| AlphaFold | entry | Q9U2A9 | ||||
| UniProt_GCRP | UniProtAcc | Q9U2A9 | ||||
| NCBI_protein | GI_number | GI:5824796 | ||||
| TREEFAM | TREEFAM_ID | TF300437 | ||||
| Protein_id | CHROMOSOME_II | CAB54439 | 1 | |||
| DB_remark | contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF08145 (BOP1NT (NUC169) domain); contains similarity to Interpro domains IPR028598 (WD repeat BOP1/Erb1), IPR001680 (WD40 repeat), IPR012953 (BOP1, N-terminal domain), IPR036322 (WD40-repeat-containing domain superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding (2) | |||||
| Visible | Gene | WBGene00012978 | ||||
| Corresponding_transcript | Y48B6A.1.1 | |||||
| Corresponding_protein | CE22116 | |||||
| Corresponding_PCR_product | cenix:57-e12 | |||||
| mv_Y48B6A.1 | ||||||
| sjj_Y48B6A.1 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (69) | ||||||
| RNAi_result | WBRNAi00037227 | |||||
| WBRNAi00056874 | ||||||
| WBRNAi00071234 | ||||||
| WBRNAi00009351 | ||||||
| WBRNAi00000309 | ||||||
| WBRNAi00103599 | ||||||
| WBRNAi00061475 | ||||||
| WBRNAi00026751 | ||||||
| WBRNAi00106940 | ||||||
| WBRNAi00094101 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Ribosome biogenesis protein BOP1 homolog | Accession_evidence | UniProt | SP:Q9U2A9 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf019328 | |||||
| Method | curated |
