WormBase Tree Display for CDS: Y2H9A.3
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| Y2H9A.3 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y2H9A | |||
| Structure | Source_exons | 1 | 141 | |||
| 671 | 1405 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q9U2P5 | ||
| UniProt | UniProtAcc | Q9U2P5 | ||||
| AlphaFold | entry | Q9U2P5 | ||||
| UniProt_GCRP | UniProtAcc | Q9U2P5 | ||||
| NCBI_protein | GI_number | GI:3979922 | ||||
| TREEFAM | TREEFAM_ID | TF316783 | ||||
| Protein_id | CHROMOSOME_V | CAA16275 | 1 | |||
| DB_remark | COL-162 protein; contains similarity to Pfam domain PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR050632 (Nematode Cuticular Collagen) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00000735 | ||||
| Corresponding_transcript | Y2H9A.3.1 | |||||
| Corresponding_protein | CE21291 | |||||
| Corresponding_PCR_product | cenix:239-e4 | |||||
| mv_C50B6.4_1 | ||||||
| sjj_C50B6.4_1 | ||||||
| sjj_Y2H9A.3 | ||||||
| smd_Y2H9A.3 | ||||||
| Corresponding_oligo_set (3) | ||||||
| Matching_cDNA (17) | ||||||
| RNAi_result | WBRNAi00020160 | |||||
| WBRNAi00042852 | ||||||
| WBRNAi00012177 | ||||||
| WBRNAi00055765 | ||||||
| Microarray_results | SMD_Y2H9A.3 | |||||
| A_12_P131725 | ||||||
| Aff_Y2H9.B | ||||||
| GPL3518_CE21291 | ||||||
| Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:Q9U2P5 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
