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WormBase Tree Display for CDS: T06E4.6

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Name Class

T06E4.6EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceT06E4
StructureSource_exons1138
2701004
DB_infoDatabaseTrEMBLUniProtAccQ22260
UniProtUniProtAccQ22260
AlphaFoldentryQ22260
UniProt_GCRPUniProtAccQ22260
NCBI_proteinGI_numberGI:3879551
TREEFAMTREEFAM_IDTF316783
Protein_idCHROMOSOME_VCAA947921
DB_remarkCOL-146 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)
OriginFrom_laboratoryHX
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00000719
Corresponding_transcriptT06E4.6.1
Corresponding_proteinCE06372
Corresponding_PCR_productcenix:242-h6
mv_T06E4.6
sjj_T06E4.6
Corresponding_oligo_set (24)
Matching_cDNA (21)
RNAi_resultWBRNAi00115938
WBRNAi00052657
WBRNAi00062960
WBRNAi00062958
WBRNAi00052655
WBRNAi00018301
WBRNAi00035271
Microarray_results (26)
Brief_identificationNematode cuticle collagen N-terminal domain-containing proteinAccession_evidenceUniProtTR:Q22260
RNASeq_FPKM (74)
Methodcurated