WormBase Tree Display for CDS: T06E4.6
expand all nodes | collapse all nodes | view schema
T06E4.6 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T06E4 | |||
Structure | Source_exons | 1 | 138 | |||
270 | 1004 | |||||
DB_info | Database | TrEMBL | UniProtAcc | Q22260 | ||
UniProt | UniProtAcc | Q22260 | ||||
AlphaFold | entry | Q22260 | ||||
UniProt_GCRP | UniProtAcc | Q22260 | ||||
NCBI_protein | GI_number | GI:3879551 | ||||
TREEFAM | TREEFAM_ID | TF316783 | ||||
Protein_id | CHROMOSOME_V | CAA94792 | 1 | |||
DB_remark | COL-146 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00000719 | ||||
Corresponding_transcript | T06E4.6.1 | |||||
Corresponding_protein | CE06372 | |||||
Corresponding_PCR_product | cenix:242-h6 | |||||
mv_T06E4.6 | ||||||
sjj_T06E4.6 | ||||||
Corresponding_oligo_set (24) | ||||||
Matching_cDNA (21) | ||||||
RNAi_result | WBRNAi00115938 | |||||
WBRNAi00052657 | ||||||
WBRNAi00062960 | ||||||
WBRNAi00062958 | ||||||
WBRNAi00052655 | ||||||
WBRNAi00018301 | ||||||
WBRNAi00035271 | ||||||
Microarray_results (26) | ||||||
Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:Q22260 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |