Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: SRAE_X000176900

expand all nodes | collapse all nodes | view schema

Name Class

SRAE_X000176900SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons157
337556
6001916
20923650
DB_infoDatabaseUniProtUniProtAccA0A090KR83
UniProtIdA0A090KR83_STRRB
DB_remarkcontains similarity to Pfam domains PF02383 (SacI homology domain), PF03372 (Endonuclease/Exonuclease/phosphatase family), PF08952 (Domain of unknown function (DUF1866)); contains similarity to Interpro domains IPR002013 (SAC domain), IPR000300 (Inositol polyphosphate-related phosphatase), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR015047 (Synaptojanin-1/2, RNA recognition motif), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR036691 (Endonuclease/exonuclease/phosphatase superfamily)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00267346
Corresponding_transcriptSRAE_X000176900.1
Corresponding_proteinSRP01602
Matching_cDNABM880223Inferred_automaticallytranscript_builder.pl
FC818631Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:000067712.4588From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
12.4953From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
12.5966From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
12.9969From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
13.024From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
13.0813From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
WBls:000067814.5189From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
16.7562From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
17.0932From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
17.2862From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
17.3674From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
17.5493From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
18.4181From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
8.86717From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
WBls:000068012.2611From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820.101855From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated