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WormBase Tree Display for CDS: SRAE_X000176400

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Name Class

SRAE_X000176400SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons (14)
DB_infoDatabaseUniProtUniProtAccA0A090KR78
UniProtIdA0A090KR78_STRRB
DB_remarkcontains similarity to Pfam domains PF00018 (SH3 domain), PF00595 (PDZ domain), PF11594 (Mediator complex subunit 28), PF14604 (Variant SH3 domain); contains similarity to Interpro domains IPR036028 (SH3-like domain superfamily), IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR001452 (SH3 domain), IPR028510 ()
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00267341
Corresponding_transcriptSRAE_X000176400.1
Corresponding_proteinSRP00130
Matching_cDNABI074160Inferred_automaticallytranscript_builder.pl
FC812025Inferred_automaticallytranscript_builder.pl
BI502146Inferred_automaticallytranscript_builder.pl
FC817628Inferred_automaticallytranscript_builder.pl
Brief_identificationCAP
RNASeq_FPKMWBls:000067736.3956From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
36.5691From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
49.342From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
50.0086From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
77.344From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
77.5372From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
WBls:000067832.9883From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
35.9795From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
40.0584From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
40.432From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
43.0728From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
43.1687From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
44.251From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
44.7652From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
WBls:000068023.545From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006829.94695From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated