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WormBase Tree Display for CDS: SRAE_X000175600

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Name Class

SRAE_X000175600SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1124
2471466
15561570
16983625
36743777
45798333
DB_infoDatabaseUniProtUniProtAccA0A090KVW3
UniProtIdA0A090KVW3_STRRB
DB_remarkcontains similarity to Pfam domains PF00052 (Laminin B (Domain IV)), PF00053 (Laminin EGF domain), PF00057 (Low-density lipoprotein receptor domain class A), PF07679 (Immunoglobulin I-set domain), PF13927 (Immunoglobulin domain); contains similarity to Interpro domains IPR036055 (LDL receptor-like superfamily), IPR000034 (Laminin IV), IPR002049 (Laminin-type EGF domain), IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR003599 (Immunoglobulin subtype), IPR003598 (Immunoglobulin subtype 2), IPR000742 (EGF-like domain), IPR013098 (Immunoglobulin I-set), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00267333
Corresponding_transcriptSRAE_X000175600.1
Corresponding_proteinSRP10247
Matching_cDNA (11)
RNASeq_FPKMWBls:000067722.2841From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
22.8814From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
26.7539From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
26.8147From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
28.0284From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
28.2608From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
WBls:00006781.69201From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
1.88842From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
1.93083From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
1.99802From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
2.42346From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
2.43657From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
2.44362From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
2.61072From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
WBls:00006805.7536From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006821.20487From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated