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WormBase Tree Display for CDS: SRAE_X000175200

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Name Class

SRAE_X000175200SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons118
70938
9985593
56565986
DB_infoDatabaseUniProtUniProtAccA0A090MPH4
UniProtIdA0A090MPH4_STRRB
DB_remarkcontains similarity to Pfam domains PF01403 (Sema domain), PF01437 (Plexin repeat), PF01833 (IPT/TIG domain), PF08337 (Plexin cytoplasmic RasGAP domain), PF17960 (TIG domain); contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR008936 (Rho GTPase activation protein), IPR002909 (IPT domain), IPR016201 (PSI domain), IPR031148 (Plexin family), IPR002165 (Plexin repeat), IPR013783 (Immunoglobulin-like fold), IPR001627 (Sema domain), IPR041019 (Plexin, TIG domain 1), IPR013548 (Plexin, cytoplasmic RasGAP domain), IPR036352 (Sema domain superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00267329
Corresponding_transcriptSRAE_X000175200.1
Corresponding_proteinSRP03225
Matching_cDNAFC814768Inferred_automaticallytranscript_builder.pl
BG893511Inferred_automaticallytranscript_builder.pl
Brief_identificationPlexin-A4
RNASeq_FPKMWBls:000067743.4704From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
44.1854From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
46.1085From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
47.2876From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
47.6882From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
47.8482From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
WBls:000067827.7612From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
30.1614From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
49.3844From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
50.2652From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
52.5969From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
53.3441From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
57.9025From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
58.3003From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
WBls:00006804.07851From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820.151226From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated