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WormBase Tree Display for CDS: SRAE_X000171700

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Name Class

SRAE_X000171700SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons141
725856
907976
13491377
14552197
25142605
26552889
59166085
61386539
DB_infoDatabaseUniProtUniProtAccA0A090KRG2
UniProtIdA0A090KRG2_STRRB
DB_remarkcontains similarity to Pfam domain PF00412 (LIM domain); contains similarity to Interpro domain IPR001781 (Zinc finger, LIM-type)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00267292
Corresponding_transcriptSRAE_X000171700.1
Corresponding_proteinSRP01458
Matching_cDNABI073855Inferred_automaticallytranscript_builder.pl
BI323081Inferred_automaticallytranscript_builder.pl
FC811467Inferred_automaticallytranscript_builder.pl
FC817003Inferred_automaticallytranscript_builder.pl
FC811066Inferred_automaticallytranscript_builder.pl
FC816541Inferred_automaticallytranscript_builder.pl
Brief_identificationZyxin
RNASeq_FPKMWBls:000067748.3213From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
50.5821From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
67.8426From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
68.2728From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
72.749From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
74.3868From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
WBls:000067810.8051From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
15.1539From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
15.5272From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
21.1035From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
21.2018From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
22.2189From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
25.152From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
26.494From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
WBls:000068065.5913From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:000068215.4356From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated