Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: SRAE_X000167900

expand all nodes | collapse all nodes | view schema

Name Class

SRAE_X000167900SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1100
1403810
38494052
DB_infoDatabaseUniProtUniProtAccA0A090MPB1
UniProtIdA0A090MPB1_STRRB
DB_remarkcontains similarity to Pfam domains PF00111 (2Fe-2S iron-sulfur cluster binding domain), PF00941 (FAD binding domain in molybdopterin dehydrogenase), PF01315 (Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain), PF01799 ([2Fe-2S] binding domain), PF02738 (Molybdopterin cofactor-binding domain), PF03450 (CO dehydrogenase flavoprotein C-terminal domain); contains similarity to Interpro domains IPR036683 (CO dehydrogenase flavoprotein, C-terminal domain superfamily), IPR002346 (Molybdopterin dehydrogenase, FAD-binding), IPR037165 (Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily), IPR000674 (Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead), IPR001041 (2Fe-2S ferredoxin-type iron-sulfur binding domain), IPR036010 (2Fe-2S ferredoxin-like superfamily), IPR016208 (Aldehyde oxidase/xanthine dehydrogenase-like), IPR002888 ([2Fe-2S]-binding), IPR005107 (CO dehydrogenase flavoprotein, C-terminal), IPR036318 (FAD-binding, type PCMH-like superfamily), IPR008274 (Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain), IPR036856 (Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily), IPR036884 ([2Fe-2S]-binding domain superfamily)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00267253
Corresponding_transcriptSRAE_X000167900.1
Corresponding_proteinSRP03192
Brief_identificationXanthine dehydrogenase
RNASeq_FPKMWBls:00006775.48945From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
5.61759From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
5.99611From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
6.35368From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
9.29753From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
9.4157From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
WBls:00006781.13144From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
1.67438From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
2.66669From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
2.68581From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
2.8112From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
2.82509From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
2.85709From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
3.4518From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
WBls:00006802.66888From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820.009875From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated