WormBase Tree Display for CDS: SRAE_X000167900
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SRAE_X000167900 | SMap | S_parent | Sequence | SRAE_chrX_scaffold2 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 100 | |||
140 | 3810 | |||||
3849 | 4052 | |||||
DB_info | Database | UniProt | UniProtAcc | A0A090MPB1 | ||
UniProtId | A0A090MPB1_STRRB | |||||
DB_remark | contains similarity to Pfam domains PF00111 (2Fe-2S iron-sulfur cluster binding domain), PF00941 (FAD binding domain in molybdopterin dehydrogenase), PF01315 (Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain), PF01799 ([2Fe-2S] binding domain), PF02738 (Molybdopterin cofactor-binding domain), PF03450 (CO dehydrogenase flavoprotein C-terminal domain); contains similarity to Interpro domains IPR036683 (CO dehydrogenase flavoprotein, C-terminal domain superfamily), IPR002346 (Molybdopterin dehydrogenase, FAD-binding), IPR037165 (Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily), IPR000674 (Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead), IPR001041 (2Fe-2S ferredoxin-type iron-sulfur binding domain), IPR036010 (2Fe-2S ferredoxin-like superfamily), IPR016208 (Aldehyde oxidase/xanthine dehydrogenase-like), IPR002888 ([2Fe-2S]-binding), IPR005107 (CO dehydrogenase flavoprotein, C-terminal), IPR036318 (FAD-binding, type PCMH-like superfamily), IPR008274 (Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain), IPR036856 (Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily), IPR036884 ([2Fe-2S]-binding domain superfamily) | |||||
Origin | From_laboratory | MBM | ||||
Species | Strongyloides ratti | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | wormbase | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00267253 | ||||
Corresponding_transcript | SRAE_X000167900.1 | |||||
Corresponding_protein | SRP03192 | |||||
Brief_identification | Xanthine dehydrogenase | |||||
RNASeq_FPKM | WBls:0000677 | 5.48945 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503 | ||
5.61759 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497 | ||||
5.99611 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502 | ||||
6.35368 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496 | ||||
9.29753 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498 | ||||
9.4157 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504 | ||||
WBls:0000678 | 1.13144 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576 | |||
1.67438 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575 | ||||
2.66669 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495 | ||||
2.68581 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501 | ||||
2.8112 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500 | ||||
2.82509 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499 | ||||
2.85709 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494 | ||||
3.4518 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493 | ||||
WBls:0000680 | 2.66888 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444 | |||
WBls:0000682 | 0.009875 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443 | |||
Method | curated |