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WormBase Tree Display for CDS: SRAE_X000166500

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Name Class

SRAE_X000166500SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1590
642747
798941
DB_infoDatabaseUniProtUniProtAccA0A090KXD5
UniProtIdA0A090KXD5_STRRB
DB_remarkcontains similarity to Pfam domain PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00267239
Corresponding_transcriptSRAE_X000166500.1
Corresponding_proteinSRP07007
Brief_identificationNeurotransmitter-gated ion-channel transmembrane domain and Neurotransmitter-gated ion-channel ligand-binding domain and Nicotinic acetylcholine-gated receptor, transmembrane domain-containing protein
RNASeq_FPKMWBls:00006770.061877From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
0.062051From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
0.337141From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
0.388029From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
0.7841From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
0From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
WBls:00006780.059483From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
0.071022From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
0.071285From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
0.10726From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
0.127191From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
0.127523From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
0From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
WBls:000068014.5282From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated