WormBase Tree Display for CDS: SRAE_X000163000
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| SRAE_X000163000 | SMap | S_parent | Sequence | SRAE_chrX_scaffold2 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 73 | |||
| 667 | 4007 | |||||
| DB_info | Database | UniProt | UniProtAcc | A0A090KXA9 | ||
| UniProtId | A0A090KXA9_STRRB | |||||
| DB_remark | contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF01404 (Ephrin receptor ligand binding domain), PF07699 (Tyrosine-protein kinase ephrin type A/B receptor-like), PF07714 (Protein tyrosine and serine/threonine kinase), PF14575 (Ephrin type-A receptor 2 transmembrane domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR008979 (Galactose-binding-like domain superfamily), IPR011641 (Tyrosine-protein kinase ephrin type A/B receptor-like), IPR001245 (Serine-threonine/tyrosine-protein kinase, catalytic domain), IPR009030 (Growth factor receptor cysteine-rich domain superfamily), IPR001090 (Ephrin receptor ligand binding domain), IPR003961 (Fibronectin type III), IPR013783 (Immunoglobulin-like fold), IPR027936 (Ephrin receptor, transmembrane domain), IPR036116 (Fibronectin type III superfamily), IPR020635 (Tyrosine-protein kinase, catalytic domain) | |||||
| Origin | From_laboratory | MBM | ||||
| Species | Strongyloides ratti | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | wormbase | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00267204 | ||||
| Corresponding_transcript | SRAE_X000163000.1 | |||||
| Corresponding_protein | SRP04309 | |||||
| Brief_identification | Eph receptor tyrosine kinase | |||||
| RNASeq_FPKM | WBls:0000677 | 25.0464 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498 | ||
| 25.9216 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504 | ||||
| 27.2298 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502 | ||||
| 28.4017 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496 | ||||
| 29.0905 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503 | ||||
| 29.9162 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497 | ||||
| WBls:0000678 | 16.7993 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575 | |||
| 21.92 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576 | ||||
| 43.8153 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499 | ||||
| 44.2338 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493 | ||||
| 45.4548 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500 | ||||
| 47.1773 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494 | ||||
| 50.5575 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501 | ||||
| 52.2402 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495 | ||||
| WBls:0000680 | 1.81755 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444 | |||
| WBls:0000682 | 0.618026 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443 | |||
| Method | curated |
