Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: SRAE_X000150600

expand all nodes | collapse all nodes | view schema

Name Class

SRAE_X000150600SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons131
86161
2143337
DB_infoDatabaseUniProtUniProtAccA0A090MNW9
UniProtIdA0A090MNW9_STRRB
DB_remarkcontains similarity to Pfam domains PF05224 (NDT80 / PhoG like DNA-binding family), PF13884 (Chaperone of endosialidase), PF13887 (Myelin regulatory factor ICA domain), PF13888 (Myelin gene regulatory factor C-terminal domain 2); contains similarity to Interpro domains IPR026932 (Myelin gene regulatory factor, ICA domain), IPR030392 (Intramolecular chaperone auto-processing domain), IPR008967 (p53-like transcription factor, DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR025719 (Myelin gene regulatory factor C-terminal domain 2), IPR024061 (NDT80 DNA-binding domain)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00267078
Corresponding_transcriptSRAE_X000150600.1
Corresponding_proteinSRP12258
Matching_cDNABG894005Inferred_automaticallytranscript_builder.pl
Brief_identificationMyelin regulatory factor
RNASeq_FPKMWBls:000067712.8703From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
13.1977From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
13.3333From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
14.1518From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
16.9664From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
17.2878From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
WBls:00006782.24867From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
2.68074From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
3.10455From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
3.41486From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
3.56542From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
3.59319From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
3.61813From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
3.75421From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
WBls:000068020.9744From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820.557628From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated