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WormBase Tree Display for CDS: SRAE_X000150300

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Name Class

SRAE_X000150300SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1238
2851194
12331239
DB_infoDatabaseUniProtUniProtAccA0A090KQG2
UniProtIdA0A090KQG2_STRRB
DB_remarkcontains similarity to Pfam domains PF00595 (PDZ domain), PF06456 (Arfaptin-like domain); contains similarity to Interpro domains IPR027267 (AH/BAR domain superfamily), IPR030798 (Arfaptin family), IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR010504 (Arfaptin homology (AH) domain)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00267075
Corresponding_transcriptSRAE_X000150300.1
Corresponding_proteinSRP10986
Brief_identificationPICK1 ortholog
RNASeq_FPKMWBls:00006771.67017From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
1.87676From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
2.06691From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
2.21477From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
2.3251From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
2.44297From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
WBls:00006780.239199From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
0.261788From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
0.772099From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
0.799349From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
1.06136From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
1.06298From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
1.15051From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
1.21828From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
WBls:00006804.45803From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820.557454From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated