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WormBase Tree Display for CDS: SRAE_X000148500

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Name Class

SRAE_X000148500SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1177
244714
756969
16091616
17564428
DB_infoDatabaseUniProtUniProtAccA0A090KV75
UniProtIdA0A090KV75_STRRB
DB_remarkcontains similarity to Pfam domains PF00565 (Staphylococcal nuclease homologue), PF00567 (Tudor domain), PF00596 (Class II Aldolase and Adducin N-terminal domain); contains similarity to Interpro domains IPR035437 (SNase-like, OB-fold superfamily), IPR002999 (Tudor domain), IPR016071 (Staphylococcal nuclease (SNase-like), OB-fold), IPR036409 (Class II aldolase/adducin N-terminal domain superfamily), IPR001303 (Class II aldolase/adducin N-terminal)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00267057
Corresponding_transcriptSRAE_X000148500.1
Corresponding_proteinSRP08649
Matching_cDNABI073835Inferred_automaticallytranscript_builder.pl
Brief_identificationLD20211p
RNASeq_FPKMWBls:0000677120.03From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
120.872From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
120.874From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
120.888From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
121.224From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
121.931From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
WBls:0000678113.526From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
113.528From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
116.016From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
117.254From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
125.686From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
127.519From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
55.2856From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
66.5291From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
WBls:000068063.475From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006823.47058From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated