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WormBase Tree Display for CDS: SRAE_X000147200

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Name Class

SRAE_X000147200SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons157
95146
1891342
DB_infoDatabaseUniProtUniProtAccA0A090KWY9
UniProtIdA0A090KWY9_STRRB
DB_remarkcontains similarity to Pfam domain PF01400 (Astacin (Peptidase family M12A)); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR001506 (Peptidase M12A), IPR006026 (Peptidase, metallopeptidase)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00267044
Corresponding_transcriptSRAE_X000147200.1
Corresponding_proteinSRP07774
Matching_cDNAFC812468Inferred_automaticallytranscript_builder.pl
FC818122Inferred_automaticallytranscript_builder.pl
BM879855Inferred_automaticallytranscript_builder.pl
Brief_identificationAstacin-like metalloendopeptidase
RNASeq_FPKMWBls:00006770.028737From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
0.02882From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
0.052013From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
0From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
WBls:00006785.14362From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
6.95482From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
7.89346From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
8.17156From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
8.38933From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
8.86961From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
9.16317From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
9.82407From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
WBls:00006800.362366From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated