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WormBase Tree Display for CDS: SRAE_X000142200

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Name Class

SRAE_X000142200SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons14546
45974838
DB_infoDatabaseUniProtUniProtAccA0A090MNP8
UniProtIdA0A090MNP8_STRRB
DB_remarkcontains similarity to Pfam domains PF00373 (FERM central domain), PF00595 (PDZ domain), PF09379 (FERM N-terminal domain), PF09380 (FERM C-terminal PH-like domain); contains similarity to Interpro domains IPR029071 (Ubiquitin-like domain superfamily), IPR014352 (FERM/acyl-CoA-binding protein superfamily), IPR001478 (PDZ domain), IPR018979 (FERM, N-terminal), IPR036034 (PDZ superfamily), IPR019748 (FERM central domain), IPR011993 (PH-like domain superfamily), IPR035963 (FERM superfamily, second domain), IPR018980 (FERM, C-terminal PH-like domain), IPR019749 (Band 4.1 domain)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00266990
Corresponding_transcriptSRAE_X000142200.1
Corresponding_proteinSRP11143
RNASeq_FPKMWBls:000067717.1101From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
17.2912From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
17.3109From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
17.7568From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
18.0297From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
18.336From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
WBls:000067810.0549From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
10.384From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
11.7898From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
12.1332From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
12.3849From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
12.5981From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
17.6029From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
8.05755From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
WBls:00006805.1132From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820.42026From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated