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WormBase Tree Display for CDS: SRAE_X000139700

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Name Class

SRAE_X000139700SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1330
376603
DB_infoDatabaseUniProtUniProtAccA0A090MNL0
UniProtIdA0A090MNL0_STRRB
DB_remarkcontains similarity to Pfam domain PF05823 (Nematode fatty acid retinoid binding protein (Gp-FAR-1)); contains similarity to Interpro domain IPR008632 (Nematode fatty acid retinoid binding)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusConfirmed
VisibleGeneWBGene00266965
Corresponding_transcriptSRAE_X000139700.1
Corresponding_proteinSRP08561
Matching_cDNABI450718Inferred_automaticallytranscript_builder.pl
CD525690Inferred_automaticallytranscript_builder.pl
FC819484Inferred_automaticallytranscript_builder.pl
CD421467Inferred_automaticallytranscript_builder.pl
FC813072Inferred_automaticallytranscript_builder.pl
FC818789Inferred_automaticallytranscript_builder.pl
CB097676Inferred_automaticallytranscript_builder.pl
FC819895Inferred_automaticallytranscript_builder.pl
FC813623Inferred_automaticallytranscript_builder.pl
FC817417Inferred_automaticallytranscript_builder.pl
Brief_identificationNematode fatty acid retinoid binding family-containing protein
RNASeq_FPKMWBls:0000677183.792From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
185.63From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
189.035From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
197.24From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
221.679From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
228.071From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
WBls:0000678121.258From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
126.246From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
173.277From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
176.304From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
186.536From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
189.544From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
74.173From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
77.2207From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
WBls:00006801264.42From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:0000682641.085From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated