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WormBase Tree Display for CDS: SRAE_X000138800

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Name Class

SRAE_X000138800SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1207
363460
7601375
14241535
16212403
24462585
DB_infoDatabaseUniProtUniProtAccA0A090KWL9
UniProtIdA0A090KWL9_STRRB
DB_remarkcontains similarity to Pfam domain PF00233 (3'5'-cyclic nucleotide phosphodiesterase); contains similarity to Interpro domains IPR036971 (3'5'-cyclic nucleotide phosphodiesterase, catalytic domain superfamily), IPR023088 (3'5'-cyclic nucleotide phosphodiesterase), IPR002073 (3'5'-cyclic nucleotide phosphodiesterase, catalytic domain), IPR003607 (HD/PDEase domain)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00266956
Corresponding_transcriptSRAE_X000138800.1
Corresponding_proteinSRP02546
Brief_identification3'5'-cyclic nucleotide phosphodiesterase,catalytic domain and HD/PDEase domain and 3'5'-cyclic nucleotide phosphodiesterase family-containing protein
RNASeq_FPKMWBls:00006771.73064From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
1.91834From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
2.04946From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
2.07274From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
2.30794From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
2.41484From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
WBls:00006780.559184From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
0.672171From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
0.758349From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
0.845946From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
0.899923From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
0.954308From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
1.04608From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
1.15432From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
WBls:000068051.5998From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated