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WormBase Tree Display for CDS: SRAE_X000135300

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Name Class

SRAE_X000135300SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1912
DB_infoDatabaseUniProtUniProtAccA0A090KWH0
UniProtIdA0A090KWH0_STRRB
DB_remarkcontains similarity to Pfam domain PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domain IPR002486 (Nematode cuticle collagen, N-terminal)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00266921
Corresponding_transcriptSRAE_X000135300.1
Corresponding_proteinSRP04160
Matching_cDNAFC816934Inferred_automaticallytranscript_builder.pl
BI742359Inferred_automaticallytranscript_builder.pl
FC811410Inferred_automaticallytranscript_builder.pl
BI323796Inferred_automaticallytranscript_builder.pl
FC817483Inferred_automaticallytranscript_builder.pl
BI323600Inferred_automaticallytranscript_builder.pl
Brief_identificationCollagen alpha-5(IV) chain
RNASeq_FPKMWBls:0000677212.069From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
225.709From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
377.426From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
381.28From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
439.297From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
445.098From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
WBls:00006780.286637From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
0.821779From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
0.873302From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
0.899622From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
1.03029From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
1.06696From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
1.11883From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
1.36065From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
WBls:00006800.303107From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006823344.08From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated