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WormBase Tree Display for CDS: SRAE_X000135200

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Name Class

SRAE_X000135200SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons11269
15101575
16391908
DB_infoDatabaseUniProtUniProtAccA0A090MNG0
UniProtIdA0A090MNG0_STRRB
DB_remarkcontains similarity to Pfam domains PF08336 (Prolyl 4-Hydroxylase alpha-subunit, N-terminal region), PF13640 (2OG-Fe(II) oxygenase superfamily); contains similarity to Interpro domains IPR006620 (Prolyl 4-hydroxylase, alpha subunit), IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR013547 (Prolyl 4-hydroxylase alpha-subunit, N-terminal)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00266920
Corresponding_transcriptSRAE_X000135200.1
Corresponding_proteinSRP10243
Matching_cDNABI502103Inferred_automaticallytranscript_builder.pl
FC817656Inferred_automaticallytranscript_builder.pl
BI397195Inferred_automaticallytranscript_builder.pl
Brief_identificationProlyl 4-hydroxylase alpha-related protein PH4[alpha]EFB
RNASeq_FPKMWBls:000067718.0938From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
19.0349From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
19.0611From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
19.3748From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
25.4421From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
25.8483From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
WBls:000067810.371From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
14.4367From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
22.0987From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
23.0939From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
23.4253From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
25.5504From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
25.7873From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
25.9483From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
WBls:000068014.6382From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006823.30431From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated