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WormBase Tree Display for CDS: SRAE_X000125700

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Name Class

SRAE_X000125700SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1147
1992881
29333180
49284962
50435258
53136369
DB_infoDatabaseUniProtUniProtAccA0A090KUG1
UniProtIdA0A090KUG1_STRRB
DB_remarkcontains similarity to Pfam domains PF00018 (SH3 domain), PF01633 (Choline/ethanolamine kinase), PF14604 (Variant SH3 domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR000261 (EH domain), IPR036028 (SH3-like domain superfamily), IPR011992 (EF-hand domain pair), IPR001452 (SH3 domain), IPR026712 ()
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00266824
Corresponding_transcriptSRAE_X000125700.1
Corresponding_proteinSRP00473
Matching_cDNABI073871Inferred_automaticallytranscript_builder.pl
BI323153Inferred_automaticallytranscript_builder.pl
Brief_identificationEPS15 homology (EH) domain and SH3 domain and Protein kinase-like domain and EF-hand domain pair-containing protein
RNASeq_FPKMWBls:000067722.9167From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
23.72From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
24.5966From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
24.5998From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
24.8946From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
25.0413From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
WBls:000067811.4677From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
13.599From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
17.6009From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
17.8769From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
19.2848From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
19.3177From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
20.1348From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
20.7745From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
WBls:000068011.613From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006821.02112From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated