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WormBase Tree Display for CDS: SRAE_X000124500

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Name Class

SRAE_X000124500SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons132
187303
357853
9471166
17391826
18654117
DB_infoDatabaseUniProtUniProtAccA0A090KW45
UniProtIdA0A090KW45_STRRB
DB_remarkcontains similarity to Pfam domains PF00076 (RNA recognition motif), PF00646 (F-box domain), PF03360 (Glycosyltransferase family 43); contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR029044 (Nucleotide-diphospho-sugar transferases), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR001810 (F-box domain), IPR032675 (Leucine-rich repeat domain superfamily), IPR005027 (Glycosyl transferase, family 43), IPR000504 (RNA recognition motif domain)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00266811
Corresponding_transcriptSRAE_X000124500.1
Corresponding_proteinSRP09405
Matching_cDNAFC817654Inferred_automaticallytranscript_builder.pl
BI502235Inferred_automaticallytranscript_builder.pl
Brief_identificationRNA recognition motif domain and F-box domain and Glycosyl transferase, family 43 and Nucleotide-binding, alpha-beta plait domain-containing protein
RNASeq_FPKMWBls:000067715.8104From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
16.7152From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
17.1599From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
17.8116From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
18.3367From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
18.9311From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
WBls:000067812.848From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
12.9352From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
14.0957From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
14.1167From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
14.2419From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
14.5396From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
5.64755From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
6.4081From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
WBls:00006805.91806From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006824.52299From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated