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WormBase Tree Display for CDS: SRAE_X000123100

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Name Class

SRAE_X000123100SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons (12)
DB_infoDatabaseUniProtUniProtAccA0A090KPH2
UniProtIdA0A090KPH2_STRRB
DB_remarkcontains similarity to Pfam domains PF01477 (PLAT/LH2 domain), PF02141 (DENN (AEX-3) domain), PF02759 (RUN domain), PF03151 (Triose-phosphate Transporter family), PF03455 (dDENN domain), PF03456 (uDENN domain); contains similarity to Interpro domains IPR005112 (dDENN domain), IPR037213 (RUN domain superfamily), IPR001024 (PLAT/LH2 domain), IPR004012 (RUN domain), IPR005113 (uDENN domain), IPR036392 (PLAT/LH2 domain superfamily), IPR004853 (Sugar phosphate transporter domain), IPR001194 (cDENN domain)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00266797
Corresponding_transcriptSRAE_X000123100.1
Corresponding_proteinSRP01852
Matching_cDNAFC820182Inferred_automaticallytranscript_builder.pl
CD524568Inferred_automaticallytranscript_builder.pl
BG894095Inferred_automaticallytranscript_builder.pl
Brief_identificationPLAT/LH2 domain and DENN domain and RUN domain and Triose-phosphate transporter domain and dDENN domain and uDENN domain and Lipase/lipooxygenase, PLAT/LH2 domain-containing protein
RNASeq_FPKMWBls:000067735.6284From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
35.9144From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
36.1263From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
36.1335From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
36.5378From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
36.7846From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
WBls:000067816.9016From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
18.3186From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
19.1976From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
19.2851From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
19.2884From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
20.1848From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
20.4504From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
20.8519From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
WBls:000068026.8375From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:000068223.4511From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated