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WormBase Tree Display for CDS: SRAE_X000122900

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Name Class

SRAE_X000122900SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1338
4005101
DB_infoDatabaseUniProtUniProtAccA0A090MN50
UniProtIdA0A090MN50_STRRB
DB_remarkcontains similarity to Pfam domains PF00176 (SNF2-related domain), PF00271 (Helicase conserved C-terminal domain), PF12054 (Domain of unknown function (DUF3535)); contains similarity to Interpro domains IPR022707 (Mot1, central domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001650 (Helicase, C-terminal domain-like), IPR038718 (SNF2-like, N-terminal domain superfamily), IPR000330 (SNF2, N-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR016024 (Armadillo-type fold)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00266795
Corresponding_transcriptSRAE_X000122900.1
Corresponding_proteinSRP06179
Brief_identificationTATA-binding protein-associated factor 172
RNASeq_FPKMWBls:000067726.1242From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
26.695From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
28.7516From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
28.8236From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
29.3515From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
30.1001From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
WBls:000067817.7011From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
19.9985From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
34.9445From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
36.6506From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
36.9284From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
37.36From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
37.4166From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
38.1228From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
WBls:00006805.36838From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820.956404From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated