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WormBase Tree Display for CDS: SRAE_X000120300

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Name Class

SRAE_X000120300SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons16
1153600
37033807
38595610
DB_infoDatabaseUniProtUniProtAccA0A090KUB1
UniProtIdA0A090KUB1_STRRB
DB_remarkcontains similarity to Pfam domains PF01493 (GXGXG motif), PF01645 (Conserved region in glutamate synthase), PF04898 (Glutamate synthase central domain), PF07992 (Pyridine nucleotide-disulphide oxidoreductase), PF14691 (Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster); contains similarity to Interpro domains IPR028261 (Dihydroprymidine dehydrogenase domain II), IPR006982 (Glutamate synthase, central-N), IPR036188 (FAD/NAD(P)-binding domain superfamily), IPR002489 (Glutamate synthase, alpha subunit, C-terminal), IPR036485 (Glutamate synthase, alpha subunit, C-terminal domain superfamily), IPR009051 (Alpha-helical ferredoxin), IPR023753 (FAD/NAD(P)-binding domain), IPR013785 (Aldolase-type TIM barrel), IPR006005 (Glutamate synthase, NADH/NADPH, small subunit 1), IPR002932 (Glutamate synthase domain)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00266769
Corresponding_transcriptSRAE_X000120300.1
Corresponding_proteinSRP07708
RNASeq_FPKMWBls:000067734.9088From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
35.0806From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
38.6578From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
40.3117From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
40.886From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
42.6663From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
WBls:000067811.5073From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
13.6487From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
13.999From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
14.7409From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
16.691From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
16.7662From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
18.0356From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
18.1295From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
WBls:000068038.0155From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006821.09165From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated