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WormBase Tree Display for CDS: SRAE_X000118800

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Name Class

SRAE_X000118800SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons11156
15192122
21852446
DB_infoDatabaseUniProtUniProtAccA0A090KU97
UniProtIdA0A090KU97_STRRB
DB_remarkcontains similarity to Pfam domains PF00178 (Ets-domain), PF02198 (Sterile alpha motif (SAM)/Pointed domain); contains similarity to Interpro domains IPR003118 (Pointed domain), IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR000418 (Ets domain), IPR013761 (Sterile alpha motif/pointed domain superfamily)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00266754
Corresponding_transcriptSRAE_X000118800.1
Corresponding_proteinSRP02785
Matching_cDNABI074020Inferred_automaticallytranscript_builder.pl
BI073408Inferred_automaticallytranscript_builder.pl
FC816362Inferred_automaticallytranscript_builder.pl
FC809803Inferred_automaticallytranscript_builder.pl
FC810905Inferred_automaticallytranscript_builder.pl
FC811193Inferred_automaticallytranscript_builder.pl
FC816680Inferred_automaticallytranscript_builder.pl
BG894172Inferred_automaticallytranscript_builder.pl
Brief_identificationEts domain and Pointed domain and Winged helix-turn-helix DNA-binding domain and Sterile alpha motif/pointed domain-containing protein
RNASeq_FPKMWBls:000067712.6093From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
12.9612From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
14.0744From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
14.5549From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
15.1331From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
15.604From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
WBls:000067810.184From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
10.7508From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
7.89333From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
8.92674From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
9.01177From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
9.26679From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
9.46724From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
9.91922From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
WBls:000068094.9068From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006821.31477From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated