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WormBase Tree Display for CDS: SRAE_X000118500

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Name Class

SRAE_X000118500SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons178
52245434
54945639
56835788
75507757
78259268
93199465
DB_infoDatabaseUniProtUniProtAccA0A090KVZ1
UniProtIdA0A090KVZ1_STRRB
DB_remarkcontains similarity to Pfam domains PF00069 (Protein kinase domain), PF00130 (Phorbol esters/diacylglycerol binding domain (C1 domain)), PF00433 (Protein kinase C terminal domain), PF12330 (Haspin like kinase domain); contains similarity to Interpro domains IPR020454 (Diacylglycerol/phorbol-ester binding), IPR011009 (Protein kinase-like domain superfamily), IPR014376 (Protein kinase C, delta/epsilon/eta/theta types), IPR017892 (Protein kinase, C-terminal), IPR000719 (Protein kinase domain), IPR000961 (AGC-kinase, C-terminal), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR035892 (C2 domain superfamily)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00266751
Corresponding_transcriptSRAE_X000118500.1
Corresponding_proteinSRP12407
RNASeq_FPKMWBls:000067710.5993From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
10.642From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
12.9462From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
14.1543From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
14.8791From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
15.391From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
WBls:000067811.5183From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
13.629From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
18.897From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
20.2112From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
20.4989From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
21.3303From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
21.5045From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
22.4549From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
WBls:000068095.5958From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820.535021From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated