WormBase Tree Display for CDS: SRAE_X000117900
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| SRAE_X000117900 | SMap | S_parent | Sequence | SRAE_chrX_scaffold2 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 380 | |||
| 432 | 645 | |||||
| DB_info | Database | UniProt | UniProtAcc | A0A090MN09 | ||
| UniProtId | A0A090MN09_STRRB | |||||
| DB_remark | contains similarity to Pfam domains PF00578 (AhpC/TSA family), PF10417 (C-terminal domain of 1-Cys peroxiredoxin); contains similarity to Interpro domains IPR024706 (Peroxiredoxin, AhpC-type), IPR019479 (Peroxiredoxin, C-terminal), IPR000866 (Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant), IPR036249 (Thioredoxin-like superfamily) | |||||
| Origin | From_laboratory | MBM | ||||
| Species | Strongyloides ratti | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | wormbase | |||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00266745 | ||||
| Corresponding_transcript | SRAE_X000117900.1 | |||||
| Corresponding_protein | SRP05721 | |||||
| Matching_cDNA | FC811992 | Inferred_automatically | transcript_builder.pl | |||
| FC812114 | Inferred_automatically | transcript_builder.pl | ||||
| BI704062 | Inferred_automatically | transcript_builder.pl | ||||
| FC817593 | Inferred_automatically | transcript_builder.pl | ||||
| FC817723 | Inferred_automatically | transcript_builder.pl | ||||
| BI704057 | Inferred_automatically | transcript_builder.pl | ||||
| CB097875 | Inferred_automatically | transcript_builder.pl | ||||
| FC810416 | Inferred_automatically | transcript_builder.pl | ||||
| FC813500 | Inferred_automatically | transcript_builder.pl | ||||
| BI742473 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant domain and Thioredoxin-like fold domain and Peroxiredoxin, C-terminal domain and Peroxiredoxin, AhpC-type family-containing protein | |||||
| RNASeq_FPKM | WBls:0000677 | 1011.19 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496 | ||
| 881.679 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498 | ||||
| 892.768 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504 | ||||
| 911.36 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497 | ||||
| 911.438 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503 | ||||
| 988.492 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502 | ||||
| WBls:0000678 | 427.046 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575 | |||
| 591.524 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576 | ||||
| 767.384 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495 | ||||
| 776.471 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501 | ||||
| 834.803 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500 | ||||
| 841.495 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494 | ||||
| 872.437 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493 | ||||
| 885.781 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499 | ||||
| WBls:0000680 | 931.208 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444 | |||
| WBls:0000682 | 2481.73 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443 | |||
| Method | curated |
