WormBase Tree Display for CDS: SRAE_X000111600
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| SRAE_X000111600 | SMap | S_parent | Sequence | SRAE_chrX_scaffold2 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 78 | |||
| 1119 | 1446 | |||||
| 1859 | 9345 | |||||
| DB_info | Database | UniProt | UniProtAcc | A0A090KVT7 | ||
| UniProtId | A0A090KVT7_STRRB | |||||
| DB_remark | contains similarity to Pfam domains PF00107 (Zinc-binding dehydrogenase), PF00109 (Beta-ketoacyl synthase, N-terminal domain), PF00550 (Phosphopantetheine attachment site), PF00698 (Acyl transferase domain), PF00975 (Thioesterase domain), PF02801 (Beta-ketoacyl synthase, C-terminal domain), PF08659 (KR domain), PF14765 (Polyketide synthase dehydratase N-terminal domain), PF16197 (Ketoacyl-synthetase C-terminal extension); contains similarity to Interpro domains IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain), IPR011032 (GroES-like superfamily), IPR036736 (ACP-like superfamily), IPR013968 (Polyketide synthase, ketoreductase domain), IPR032821 (Polyketide synthase, C-terminal extension), IPR029058 (Alpha/Beta hydrolase fold), IPR014031 (Beta-ketoacyl synthase, C-terminal), IPR036291 (NAD(P)-binding domain superfamily), IPR014043 (Acyl transferase), IPR023102 (), IPR009081 (Phosphopantetheine binding ACP domain), IPR001031 (Thioesterase), IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase), IPR020807 (Polyketide synthase, dehydratase domain), IPR013149 (Alcohol dehydrogenase-like, C-terminal), IPR020843 (Polyketide synthase, enoylreductase domain), IPR042104 (Polyketide synthase, dehydratase domain superfamily), IPR016036 (Malonyl-CoA ACP transacylase, ACP-binding), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR014030 (Beta-ketoacyl synthase, N-terminal), IPR020801 (), IPR016039 (Thiolase-like), IPR020806 (Polyketide synthase, phosphopantetheine-binding domain), IPR001227 (Acyl transferase domain superfamily) | |||||
| Origin | From_laboratory | MBM | ||||
| Species | Strongyloides ratti | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | wormbase | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00266681 | ||||
| Corresponding_transcript | SRAE_X000111600.1 | |||||
| Corresponding_protein | SRP09889 | |||||
| Matching_cDNA | FC810339 | Inferred_automatically | transcript_builder.pl | |||
| FC814746 | Inferred_automatically | transcript_builder.pl | ||||
| FC816203 | Inferred_automatically | transcript_builder.pl | ||||
| BI742411 | Inferred_automatically | transcript_builder.pl | ||||
| FC815826 | Inferred_automatically | transcript_builder.pl | ||||
| BG894282 | Inferred_automatically | transcript_builder.pl | ||||
| FC815730 | Inferred_automatically | transcript_builder.pl | ||||
| BI742430 | Inferred_automatically | transcript_builder.pl | ||||
| BI741845 | Inferred_automatically | transcript_builder.pl | ||||
| BI450481 | Inferred_automatically | transcript_builder.pl | ||||
| RNASeq_FPKM | WBls:0000677 | 12.8224 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498 | ||
| 13.107 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504 | ||||
| 14.7661 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497 | ||||
| 15.2912 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503 | ||||
| 15.914 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496 | ||||
| 15.9982 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502 | ||||
| WBls:0000678 | 2.64337 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575 | |||
| 3.32763 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576 | ||||
| 4.60358 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500 | ||||
| 5.01263 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494 | ||||
| 6.29 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493 | ||||
| 6.30654 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501 | ||||
| 6.36435 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499 | ||||
| 6.40703 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495 | ||||
| WBls:0000680 | 22.675 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444 | |||
| WBls:0000682 | 0.059881 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443 | |||
| Method | curated |
