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WormBase Tree Display for CDS: SRAE_X000108800

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Name Class

SRAE_X000108800SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1109
163466
25453656
36964003
DB_infoDatabaseUniProtUniProtAccA0A090KPN7
UniProtIdA0A090KPN7_STRRB
DB_remarkcontains similarity to Pfam domains PF02338 (OTU-like cysteine protease), PF03226 (Yippee zinc-binding/DNA-binding /Mis18, centromere assembly); contains similarity to Interpro domains IPR038765 (Papain-like cysteine peptidase superfamily), IPR003323 (OTU domain), IPR004910 (Yippee/Mis18/Cereblon), IPR039058 (Yippee family)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00266653
Corresponding_transcriptSRAE_X000108800.1
Corresponding_proteinSRP05122
Brief_identificationAT23158p
RNASeq_FPKMWBls:000067710.331From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
11.0344From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
12.9061From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
13.017From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
13.4813From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
14.6707From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
WBls:000067817.0145From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
20.2288From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
20.5317From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
21.1168From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
21.3312From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
22.2447From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
22.8263From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
23.2326From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
WBls:000068035.0537From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:000068210.4138From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated