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WormBase Tree Display for CDS: SRAE_X000108300

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Name Class

SRAE_X000108300SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons13759
DB_infoDatabaseUniProtUniProtAccA0A090KP10
UniProtIdA0A090KP10_STRRB
DB_remarkcontains similarity to Pfam domains PF00078 (Reverse transcriptase (RNA-dependent DNA polymerase)), PF00665 (Integrase core domain), PF13650 (Aspartyl protease), PF17919 (RNase H-like domain found in reverse transcriptase), PF17921 (Integrase zinc binding domain); contains similarity to Interpro domains IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily), IPR021109 (Aspartic peptidase domain superfamily), IPR000477 (Reverse transcriptase domain), IPR001584 (Integrase, catalytic core), IPR041577 (Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain), IPR041588 (Integrase zinc-binding domain)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00266647
Corresponding_transcriptSRAE_X000108300.1
Corresponding_proteinSRP11290
Brief_identificationReverse transcriptase domain and Integrase,catalytic core domain and Ribonuclease H-like domain and Aspartic peptidase domain-containing protein
RNASeq_FPKMWBls:00006770.153233From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
0.168913From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
0.215626From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
0.22198From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
0.224137From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
0.238799From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
WBls:00006780.127419From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
0.148258From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
0.170894From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
0.192114From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
0.220854From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
0.238047From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
0.30703From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
0.518891From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
WBls:00006800.184115From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820.057717From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated