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WormBase Tree Display for CDS: SRAE_X000106300

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Name Class

SRAE_X000106300SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons11683
17402547
26002646
26952703
DB_infoDatabaseUniProtUniProtAccA0A090KVP4
UniProtIdA0A090KVP4_STRRB
DB_remarkcontains similarity to Pfam domains PF02437 (SKI/SNO/DAC family), PF08782 (c-SKI Smad4 binding domain); contains similarity to Interpro domains IPR023216 (Transcription regulator SKI/SnoN), IPR010919 (SAND-like domain superfamily), IPR014890 (c-SKI SMAD4-binding domain), IPR009061 (Putative DNA-binding domain superfamily), IPR003380 (SKI/SNO/DAC domain), IPR037000 (Ski-like, DNA-binding domain superfamily)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00266626
Corresponding_transcriptSRAE_X000106300.1
Corresponding_proteinSRP04087
Brief_identificationSno oncogene
RNASeq_FPKMWBls:00006773.85919From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
4.25608From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
4.58516From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
4.62359From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
5.04028From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
5.286From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
WBls:00006782.75695From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
2.85297From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
2.89199From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
2.98386From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
3.23213From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
3.88144From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
3.94357From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
5.75927From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
WBls:000068017.3725From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated