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WormBase Tree Display for CDS: SRAE_X000106100

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Name Class

SRAE_X000106100SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1546
DB_infoDatabaseUniProtUniProtAccA0A090KTX8
UniProtIdA0A090KTX8_STRRB
DB_remarkcontains similarity to Pfam domain PF01956 (Integral membrane protein EMC3/TMCO1-like); contains similarity to Interpro domains IPR008559 (Calcium load-activated calcium channel), IPR002809 (Integral membrane protein EMC3/TMCO1-like)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00266624
Corresponding_transcriptSRAE_X000106100.1
Corresponding_proteinSRP08778
Matching_cDNAFC821993Inferred_automaticallytranscript_builder.pl
CB274985Inferred_automaticallytranscript_builder.pl
FC821934Inferred_automaticallytranscript_builder.pl
CB275190Inferred_automaticallytranscript_builder.pl
FC821381Inferred_automaticallytranscript_builder.pl
FC821319Inferred_automaticallytranscript_builder.pl
Brief_identificationTmco1 protein
RNASeq_FPKMWBls:0000677128.518From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
132.258From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
139.316From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
147.08From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
165.885From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
171.791From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
WBls:0000678164.298From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
167.915From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
170.68From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
175.872From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
182.22From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
185.375From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
64.5772From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
77.8647From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
WBls:000068050.4301From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:0000682150.412From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated