Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: SRAE_X000103200

expand all nodes | collapse all nodes | view schema

Name Class

SRAE_X000103200SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1923
10571145
12511374
14541649
DB_infoDatabaseUniProtUniProtAccA0A090MMP2
UniProtIdA0A090MMP2_STRRB
DB_remarkcontains similarity to Pfam domain PF04904 (NAB conserved region 1 (NCD1)); contains similarity to Interpro domains IPR006988 (Nab, N-terminal), IPR039040 (NAB family)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00266595
Corresponding_transcriptSRAE_X000103200.1
Corresponding_proteinSRP05679
Matching_cDNAFC819997Inferred_automaticallytranscript_builder.pl
CD523828Inferred_automaticallytranscript_builder.pl
FC820380Inferred_automaticallytranscript_builder.pl
CD524495Inferred_automaticallytranscript_builder.pl
Brief_identificationNGFI-A-binding protein homolog
RNASeq_FPKMWBls:000067745.0749From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
45.1195From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
45.1925From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
46.6368From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
46.9049From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
48.508From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
WBls:000067832.7667From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
49.1502From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
52.5538From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
54.4256From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
54.7952From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
59.3089From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
59.9838From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
60.115From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
WBls:00006808.52009From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006823.90207From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated