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WormBase Tree Display for CDS: SRAE_X000102500

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Name Class

SRAE_X000102500SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons111
521798
18552184
DB_infoDatabaseUniProtUniProtAccA0A090KPI9
UniProtIdA0A090KPI9_STRRB
DB_remarkcontains similarity to Pfam domains PF00017 (SH2 domain), PF00102 (Protein-tyrosine phosphatase); contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR036860 (SH2 domain superfamily), IPR029021 (Protein-tyrosine phosphatase-like), IPR000242 (Tyrosine-specific protein phosphatase, PTPase domain), IPR000980 (SH2 domain)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00266588
Corresponding_transcriptSRAE_X000102500.1
Corresponding_proteinSRP03851
Matching_cDNAFC810798Inferred_automaticallytranscript_builder.pl
BI741968Inferred_automaticallytranscript_builder.pl
BI397330Inferred_automaticallytranscript_builder.pl
BI324243Inferred_automaticallytranscript_builder.pl
FC816242Inferred_automaticallytranscript_builder.pl
FC815402Inferred_automaticallytranscript_builder.pl
FC815938Inferred_automaticallytranscript_builder.pl
Brief_identificationTyrosine-protein phosphatase non-receptor type 6
RNASeq_FPKMWBls:000067720.0152From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
20.1672From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
20.5003From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
22.2156From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
22.2894From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
23.5107From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
WBls:000067811.6513From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
17.5575From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
18.5404From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
18.6971From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
18.7937From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
19.4057From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
20.8655From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
22.0488From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
WBls:000068052.4489From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006822.0314From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated