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WormBase Tree Display for CDS: SRAE_X000102000

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Name Class

SRAE_X000102000SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons178
120764
10631713
DB_infoDatabaseUniProtUniProtAccA0A090KPI2
UniProtIdA0A090KPI2_STRRB
DB_remarkcontains similarity to Pfam domain PF00155 (Aminotransferase class I and II); contains similarity to Interpro domains IPR005958 (Tyrosine/nicotianamine aminotransferase), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR004839 (Aminotransferase, class I/classII), IPR015421 (Pyridoxal phosphate-dependent transferase, major domain), IPR015422 (Pyridoxal phosphate-dependent transferase, small domain), IPR005957 (Tyrosine aminotransferase)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00266583
Corresponding_transcriptSRAE_X000102000.1
Corresponding_proteinSRP07011
Matching_cDNABI397137Inferred_automaticallytranscript_builder.pl
FC816880Inferred_automaticallytranscript_builder.pl
Brief_identificationTyrosine aminotransferase
RNASeq_FPKMWBls:0000677109.763From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
112.919From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
130.405From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
131.564From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
89.4952From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
90.9136From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
WBls:0000678129.424From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
132.426From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
38.9007From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
47.6928From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
85.2507From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
85.708From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
92.4824From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
94.7878From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
WBls:00006804600.93From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:000068218.9656From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated