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WormBase Tree Display for CDS: SRAE_X000100700

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Name Class

SRAE_X000100700SMapS_parentSequenceSRAE_chrX_scaffold2
StructureSource_exons1679
13701595
16461832
19126006
60796324
80288195
82469475
95259650
DB_infoDatabaseUniProtUniProtAccA0A090MMM3
UniProtIdA0A090MMM3_STRRB
DB_remarkcontains similarity to Pfam domains PF00090 (Thrombospondin type 1 domain), PF01421 (Reprolysin (M12B) family zinc metalloprotease), PF01562 (Reprolysin family propeptide), PF05986 (ADAM-TS Spacer 1), PF08685 (GON domain), PF17771 (ADAMTS cysteine-rich domain 2); contains similarity to Interpro domains IPR036383 (Thrombospondin type-1 (TSP1) repeat superfamily), IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR013273 (ADAMTS/ADAMTS-like), IPR012314 (Peptidase M12B, GON-ADAMTSs), IPR010294 (ADAMTS/ADAMTS-like, Spacer 1), IPR002870 (Peptidase M12B, propeptide), IPR000884 (Thrombospondin type-1 (TSP1) repeat), IPR041645 (ADAMTS, cysteine-rich domain 2), IPR001590 (Peptidase M12B, ADAM/reprolysin)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPredicted
VisibleGeneWBGene00266570
Corresponding_transcriptSRAE_X000100700.1
Corresponding_proteinSRP01038
Brief_identificationA disintegrin and metalloproteinase with thrombospondin motifs 9
RNASeq_FPKMWBls:000067715.4922From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
16.1612From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
16.2865From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
16.8217From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
19.5353From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
19.8907From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
WBls:000067810.6609From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
10.7521From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
5.96457From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
7.51049From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
7.8507From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
9.3951From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
9.57438From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
9.69879From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
WBls:000068013.6577From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820.33754From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated